pycom16g04880

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002960
Physical Location & Seq
Forward (+)
3126945 .. 3129078
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 798 bp
ATGGACGACATAAAGGGCGTTGCAGATACGACGTCGCAGAGCGGACCCAAAAAGGCGAGGACGACGACCACCGAAACCTCCTCCATGAAAGACGCCTTCTCCAAATACGCCGATTCTCTCAACAATCTCAATGACAAGCGGGAAAGGGTCGTAAAAGCAAGTCGCGATATCACCATTAACAGCAAAAAGGTCATCTTTCAGGTTCACAGAATCAGTAAACACAACAAAGAGGAAGTCCTGCAGAAAGCTGAAAAGGATTTAGTAGCTGTGACGGATCAGTACATTTCCCGGCTGGTTAGAGAGCTGCAGGGGACTGATTTTTGGAAGCTGAGACGAGCATACTCACCTGGGGTACAAGAATATGTTGAAGCTGCAACCTTCTGTAAATTTTGCAGGACTGGGACTCTTTTAAATCTTGAGGAGCTAAATGCCACCTTGCTGCCACTCAGCGATCCGTCTCTTGAACCTTTGCAGATCAATGTACTTGATTATCTGCTCGGGCTTGCTGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGAGAACTTGAATTTGCTAATAAGATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTGGTTGTTCCATTAATGGAAGCTAGCAATGACATGAAGACAAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAAAATGCTTGCTTTGGTGTTCATGTGAGAGGATCAGAGTATATGCCGCTACTTGGCTCCGATCGATCCAACTTCCTTCTTATTGGCAGTGCCCGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

266

Amino Acids

29.92

Weight (kDa)

8.25

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 45 - 243 2.3e-58 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 42
AccII CGCG 1 cut(s) 165
AciI CCGC 4 cut(s) 42, 139, 529, 743
AclWI GGATC 4 cut(s) 282, 446, 736, 756
AcsI RAATTY 4 cut(s) 386, 546, 566, 600
AcyI GRCGYC 2 cut(s) 32, 93
AfaI GTAC 3 cut(s) 281, 354, 483
AfiI CCNNNNNNNGG 1 cut(s) 749
AgsI TTSAA 4 cut(s) 368, 464, 566, 680
AjnI CCWGG 2 cut(s) 346, 618
AluBI AGCT 8 cut(s) 248, 266, 304, 328, 371, 424, 523, 641
AluI AGCT 8 cut(s) 248, 266, 304, 328, 371, 424, 523, 641
Alw26I GTCTC 2 cut(s) 325, 462
AlwI GGATC 4 cut(s) 282, 446, 736, 756
Ama87I CYCGRG 1 cut(s) 497
ApeKI GCWGC 3 cut(s) 304, 371, 439
ApoI RAATTY 4 cut(s) 386, 546, 566, 600
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AseI ATTAAT 1 cut(s) 632
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 163, 336
AsuNHI GCTAGC 1 cut(s) 641
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 662
BbvI GCAGC 3 cut(s) 291, 358, 426
BccI CCATC 1 cut(s) 548
BciT130I CCWGG 2 cut(s) 348, 620
BciVI GTATCC 1 cut(s) 661
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 325, 462
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 2 cut(s) 239, 305
BfuI GTATCC 1 cut(s) 661
BisI GCNGC 4 cut(s) 305, 372, 440, 743
BlsI GCNGC 4 cut(s) 306, 373, 441, 744
Bme1390I CCNGG 3 cut(s) 289, 348, 620
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 46, 754
BmrFI CCNGG 3 cut(s) 289, 348, 620
BmrI ACTGGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 516
BmtI GCTAGC 1 cut(s) 645
BmuI ACTGGG 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 662
BpmI CTGGAG 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 289
Bsa29I ATCGAT 1 cut(s) 760
BsaHI GRCGYC 2 cut(s) 32, 93
BsaJI CCNNGG 2 cut(s) 347, 618
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse1I ACTGG 2 cut(s) 403, 520
Bse3DI GCAATG 1 cut(s) 652
BseBI CCWGG 2 cut(s) 348, 620
BseCI ATCGAT 1 cut(s) 760
BseDI CCNNGG 2 cut(s) 347, 618
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 2 cut(s) 320, 460
BseNI ACTGG 2 cut(s) 403, 520
BseRI GAGGAG 2 cut(s) 70, 434
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 3 cut(s) 291, 358, 426
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 760
BshVI ATCGAT 1 cut(s) 760
BsiEI CGRYCG 1 cut(s) 760
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 2 cut(s) 325, 415
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 2 cut(s) 325, 462
BsmBI CGTCTC 2 cut(s) 325, 462
BsmFI GGGAC 2 cut(s) 325, 415
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 790
Bsp143I GATC 6 cut(s) 274, 451, 474, 728, 757, 761
Bsp68I TCGCGA 1 cut(s) 165
BspACI CCGC 4 cut(s) 42, 139, 529, 743
BspCNI CTCAG 2 cut(s) 321, 459
BspDI ATCGAT 1 cut(s) 760
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 46, 754
BspMAI CTGCAG 2 cut(s) 243, 309
BspOI GCTAGC 1 cut(s) 645
BspPI GGATC 4 cut(s) 282, 446, 736, 756
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 2 cut(s) 403, 520
BssECI CCNNGG 2 cut(s) 347, 618
BssMI GATC 6 cut(s) 274, 451, 474, 728, 757, 761
BssNI GRCGYC 2 cut(s) 32, 93
Bst2UI CCWGG 2 cut(s) 348, 620
BstACI GRCGYC 2 cut(s) 32, 93
BstC8I GCNNGC 3 cut(s) 504, 643, 706
BstDEI CTNAG 2 cut(s) 329, 446
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 6 cut(s) 277, 454, 477, 731, 760, 764
BstMAI GTCTC 2 cut(s) 325, 462
BstMBI GATC 6 cut(s) 274, 451, 474, 728, 757, 761
BstMCI CGRYCG 1 cut(s) 760
BstNI CCWGG 2 cut(s) 348, 620
BstSCI CCNGG 3 cut(s) 287, 346, 618
BstSFI CTRYAG 2 cut(s) 239, 305
BstSLI GKGCMC 1 cut(s) 790
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 291, 358, 426
BstV2I GAAGAC 1 cut(s) 662
Bsu15I ATCGAT 1 cut(s) 760
BsuI GTATCC 1 cut(s) 661
BsuTUI ATCGAT 1 cut(s) 760
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 1 cut(s) 790
BtuMI TCGCGA 1 cut(s) 165
Cac8I GCNNGC 3 cut(s) 504, 643, 706
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 760
CseI GACGC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 280, 353, 482
CviAII CATG 3 cut(s) 85, 652, 719
CviQI GTAC 3 cut(s) 280, 353, 482
DdeI CTNAG 2 cut(s) 329, 446
DpnI GATC 6 cut(s) 276, 453, 476, 730, 759, 763
DpnII GATC 6 cut(s) 274, 451, 474, 728, 757, 761
DraI TTTAAA 1 cut(s) 411
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 346, 618
EcoRV GATATC 1 cut(s) 169
Esp3I CGTCTC 2 cut(s) 325, 462
FaeI CATG 3 cut(s) 88, 655, 722
FaiI YATR 9 cut(s) 11, 86, 340, 363, 583, 653, 720, 738, 740
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 2 cut(s) 325, 415
FatI CATG 3 cut(s) 84, 651, 718
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 305, 372, 440, 743
Fsp4HI GCNGC 4 cut(s) 305, 372, 440, 743
FspBI CTAG 1 cut(s) 642
GluI GCNGC 4 cut(s) 305, 372, 440, 743
GsuI CTGGAG 1 cut(s) 537
HapII CCGG 1 cut(s) 289
HgaI GACGC 1 cut(s) 101
Hin1I GRCGYC 2 cut(s) 32, 93
Hin1II CATG 3 cut(s) 88, 655, 722
HinfI GANTC 3 cut(s) 113, 210, 403
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 163, 336
Hpy166II GTNNAC 2 cut(s) 205, 218
Hpy188I TCNGA 3 cut(s) 553, 733, 757
Hpy188III TCNNGA 3 cut(s) 164, 416, 461
Hpy8I GTNNAC 2 cut(s) 205, 218
Hpy99I CGWCG 4 cut(s) 34, 37, 67, 795
HpyAV CCTTC 3 cut(s) 106, 388, 782
HpyCH4IV ACGT 2 cut(s) 32, 793
HpyCH4V TGCA 7 cut(s) 23, 241, 307, 374, 393, 472, 585
HpyF3I CTNAG 2 cut(s) 329, 446
HpySE526I ACGT 2 cut(s) 32, 793
Hsp92I GRCGYC 2 cut(s) 32, 93
Hsp92II CATG 3 cut(s) 88, 655, 722
Kzo9I GATC 6 cut(s) 274, 451, 474, 728, 757, 761
LmnI GCTCC 2 cut(s) 421, 758
Lsp1109I GCAGC 3 cut(s) 291, 358, 426
LweI GCATC 1 cut(s) 516
MaeI CTAG 1 cut(s) 642
MaeII ACGT 2 cut(s) 32, 793
MaeIII GTNAC 1 cut(s) 268
MalI GATC 6 cut(s) 276, 453, 476, 730, 759, 763
MbiI CCGCTC 1 cut(s) 42
MboI GATC 6 cut(s) 274, 451, 474, 728, 757, 761
MboII GAAGA 2 cut(s) 667, 703
MfeI CAATTG 1 cut(s) 537
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 5 cut(s) 386, 537, 546, 566, 600
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 789
MnlI CCTC 6 cut(s) 51, 88, 91, 223, 412, 719
MseI TTAA 3 cut(s) 177, 410, 632
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 3 cut(s) 289, 348, 620
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 2 cut(s) 348, 620
MvnI CGCG 1 cut(s) 165
NciI CCSGG 1 cut(s) 289
NdeII GATC 6 cut(s) 274, 451, 474, 728, 757, 761
NheI GCTAGC 1 cut(s) 641
NlaIII CATG 3 cut(s) 88, 655, 722
NlaIV GGNNCC 2 cut(s) 46, 754
NmuCI GTSAC 1 cut(s) 268
NruI TCGCGA 1 cut(s) 165
PfeI GAWTC 2 cut(s) 113, 210
PkrI GCNGC 4 cut(s) 306, 373, 441, 744
Ple19I CGATCG 1 cut(s) 760
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 346, 618
PspGI CCWGG 2 cut(s) 346, 618
PspN4I GGNNCC 2 cut(s) 46, 754
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 2 cut(s) 243, 309
PvuI CGATCG 1 cut(s) 760
RruI TCGCGA 1 cut(s) 165
RsaI GTAC 3 cut(s) 281, 354, 483
RsaNI GTAC 3 cut(s) 280, 353, 482
SaqAI TTAA 3 cut(s) 177, 410, 632
SatI GCNGC 4 cut(s) 305, 372, 440, 743
Sau3AI GATC 6 cut(s) 274, 451, 474, 728, 757, 761
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 3 cut(s) 289, 348, 620
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 1 cut(s) 516
SfcI CTRYAG 2 cut(s) 239, 305
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 5 cut(s) 386, 537, 546, 566, 600
SsiI CCGC 4 cut(s) 42, 139, 529, 743
SspMI CTAG 1 cut(s) 642
StyD4I CCNGG 3 cut(s) 287, 346, 618
TaiI ACGT 2 cut(s) 35, 796
TaqI TCGA 2 cut(s) 544, 760
TasI AATT 5 cut(s) 386, 537, 546, 566, 600
TatI WGTACW 2 cut(s) 279, 481
TauI GCSGC 1 cut(s) 745
TfiI GAWTC 2 cut(s) 113, 210
Tru1I TTAA 3 cut(s) 177, 410, 632
Tru9I TTAA 3 cut(s) 177, 410, 632
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 3 cut(s) 304, 371, 439
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 4 cut(s) 101, 668, 704, 707
TspGWI ACGGA 2 cut(s) 287, 444
TspRI CASTG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 632
XapI RAATTY 4 cut(s) 386, 546, 566, 600
XspI CTAG 1 cut(s) 642
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.