Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

6336598 .. 6338764

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTCACGATATTCGTTGATGTTTACCTTTGTCGAAGCGCCGCGGTTGCGCGCCGCTCACTCTACAACGTTCTAAACGGTAAAACACAAACCCTGCACCCGCGCACCGCCACAACTAACACCACCATGTTGGCGGCTCTACGATCTCAGTCACTCTCTCTCTCGTTTTCTTCTTCCTCGTCGCTCCTTCGACAATGGAAGCTAGGGTTTCCGGCCGCGTACTCTACGTTCGCAGGCAAAGGCCTCCTCCACCTCCAAGAGGTCGAGAAGGTTCTCAGCGACGTGAAGGCAGACGACGTGAAGGTCATACCGGCGGGTAAGCACTGCGAGTGGGCGGATTTCATGGTCCTCGCTACCGGAAGATCCATGTGGCACGTCAAGAACATCGCTCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGCAAGGAGGTGAGCGGCTAGTGCTTCCCAGTGTCGAAGGGCAAGAGGGAGGAAAGTGGATTGTCATTGACTCTGGCAAAGTGATAATTCATGCTCTTGATGAGAACGCTAGAGCTTACTACAATTTGGAGGCTCTTTGGACCTCGAAGAAGTTGGAAAAAGAAACATTGGAGGATTTGGATAAGGCTTTTGTGAAGATTCGTCTGAAGAACAACTCCAAGAGGAAACCAACAATGAAACGGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

223

Amino Acids

24.9

Weight (kDa)

9.82

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	87 - 187	1.9e-24	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccBSI	CCGCTC	2 cut(s)	57, 436
AccII	CGCG	4 cut(s)	44, 52, 103, 218
AclI	AACGTT	1 cut(s)	69
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	647
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	259
AjiI	CACGTC	3 cut(s)	283, 298, 376
AluBI	AGCT	2 cut(s)	202, 536
AluI	AGCT	2 cut(s)	202, 536
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	2 cut(s)	213, 241
ApeKI	GCWGC	1 cut(s)	421
AspLEI	GCGC	4 cut(s)	41, 52, 54, 105
AspS9I	GGNCC	2 cut(s)	346, 561
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	346, 561
BbvI	GCAGC	1 cut(s)	433
BfaI	CTAG	3 cut(s)	203, 440, 531
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	6 cut(s)	42, 55, 135, 216, 422, 437
BlsI	GCNGC	6 cut(s)	43, 56, 136, 217, 423, 438
Bme18I	GGWCC	2 cut(s)	346, 561
BmgBI	CACGTC	3 cut(s)	283, 298, 376
BmgT120I	GGNCC	2 cut(s)	346, 561
BmrI	ACTGGG	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	161, 289
BseNI	ACTGG	1 cut(s)	450
BsePI	GCGCGC	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	4 cut(s)	44, 52, 103, 218
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	215, 243
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	212, 311, 357
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	2 cut(s)	215, 243
Bsp143I	GATC	2 cut(s)	143, 362
BspANI	GGCC	2 cut(s)	215, 243
BspCNI	CTCAG	2 cut(s)	160, 288
BspFNI	CGCG	4 cut(s)	44, 52, 103, 218
BspPI	GGATC	1 cut(s)	357
BsrBI	CCGCTC	2 cut(s)	57, 436
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	42
BssHII	GCGCGC	1 cut(s)	50
BssMI	GATC	2 cut(s)	143, 362
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	52, 235
BstDEI	CTNAG	3 cut(s)	147, 275, 411
BstDSI	CCRYGG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstFNI	CGCG	4 cut(s)	44, 52, 103, 218
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	4 cut(s)	41, 52, 54, 105
BstKTI	GATC	2 cut(s)	146, 365
BstMBI	GATC	2 cut(s)	143, 362
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 421, 442
BstUI	CGCG	4 cut(s)	44, 52, 103, 218
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	362
BstZI	CGGCCG	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	215, 243
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	370
BtrI	CACGTC	3 cut(s)	283, 298, 376
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	322, 457
Cac8I	GCNNGC	2 cut(s)	52, 235
CfoI	GCGC	4 cut(s)	41, 52, 54, 105
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	346, 561
Cfr42I	CCGCGG	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	127, 343, 367, 512
CviJI	RGCY	9 cut(s)	137, 202, 215, 243, 395, 439, 536, 554, 608
CviKI_1	RGCY	9 cut(s)	137, 202, 215, 243, 395, 439, 536, 554, 608
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	147, 275, 411
DpnI	GATC	2 cut(s)	145, 364
DpnII	GATC	2 cut(s)	143, 362
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	213
EagI	CGGCCG	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	350
EclXI	CGGCCG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	346, 561
Eco52I	CGGCCG	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	647
EcoNI	CCTNNNNNAGG	1 cut(s)	257
FaeI	CATG	4 cut(s)	130, 346, 370, 515
FaiI	YATR	5 cut(s)	128, 308, 344, 368, 513
FatI	CATG	4 cut(s)	126, 342, 366, 511
FauI	CCCGC	2 cut(s)	108, 307
Fnu4HI	GCNGC	6 cut(s)	42, 55, 135, 216, 422, 437
Fsp4HI	GCNGC	6 cut(s)	42, 55, 135, 216, 422, 437
FspBI	CTAG	3 cut(s)	203, 440, 531
GlaI	GCGC	4 cut(s)	40, 51, 53, 104
GluI	GCNGC	6 cut(s)	42, 55, 135, 216, 422, 437
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	215, 243
HapII	CCGG	3 cut(s)	212, 311, 357
HhaI	GCGC	4 cut(s)	41, 52, 54, 105
Hin1II	CATG	4 cut(s)	130, 346, 370, 515
Hin6I	GCGC	4 cut(s)	39, 50, 52, 103
HinP1I	GCGC	4 cut(s)	39, 50, 52, 103
HinfI	GANTC	2 cut(s)	491, 619
HpaII	CCGG	3 cut(s)	212, 311, 357
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	6, 25
Hpy188I	TCNGA	1 cut(s)	627
Hpy188III	TCNNGA	4 cut(s)	7, 265, 379, 518
Hpy8I	GTNNAC	2 cut(s)	6, 25
Hpy99I	CGWCG	3 cut(s)	184, 284, 299
HpyAV	CCTTC	5 cut(s)	197, 262, 280, 295, 452
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	5 cut(s)	69, 227, 282, 297, 375
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 421, 442
HpyF3I	CTNAG	3 cut(s)	147, 275, 411
HpySE526I	ACGT	5 cut(s)	69, 227, 282, 297, 375
Hsp92II	CATG	4 cut(s)	130, 346, 370, 515
HspAI	GCGC	4 cut(s)	39, 50, 52, 103
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	143, 362
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	7 cut(s)	107, 219, 225, 324, 370, 463, 480
Lsp1109I	GCAGC	1 cut(s)	433
MaeI	CTAG	3 cut(s)	203, 440, 531
MaeII	ACGT	5 cut(s)	69, 227, 282, 297, 375
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	2 cut(s)	145, 364
MbiI	CCGCTC	2 cut(s)	57, 436
MboI	GATC	2 cut(s)	143, 362
MboII	GAAGA	6 cut(s)	162, 165, 372, 580, 628, 640
MflI	RGATCY	1 cut(s)	362
MluCI	AATT	3 cut(s)	399, 507, 544
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	212, 311, 357
MvnI	CGCG	4 cut(s)	44, 52, 103, 218
MwoI	GCNNNNNNNGC	3 cut(s)	47, 421, 442
NdeII	GATC	2 cut(s)	143, 362
NlaIII	CATG	4 cut(s)	130, 346, 370, 515
NmuCI	GTSAC	1 cut(s)	150
PauI	GCGCGC	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	619
PkrI	GCNGC	6 cut(s)	43, 56, 136, 217, 423, 438
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
Psp1406I	AACGTT	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	346, 561
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
PsuI	RGATCY	1 cut(s)	362
PteI	GCGCGC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	125
SacII	CCGCGG	1 cut(s)	45
SatI	GCNGC	6 cut(s)	42, 55, 135, 216, 422, 437
Sau3AI	GATC	2 cut(s)	143, 362
Sau96I	GGNCC	2 cut(s)	346, 561
SchI	GAGTC	1 cut(s)	485
Sfr303I	CCGCGG	1 cut(s)	45
SgrBI	CCGCGG	1 cut(s)	45
SinI	GGWCC	2 cut(s)	346, 561
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	399, 507, 544
SseBI	AGGCCT	1 cut(s)	243
SspMI	CTAG	3 cut(s)	203, 440, 531
StuI	AGGCCT	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	5 cut(s)	72, 230, 285, 300, 378
TaqI	TCGA	5 cut(s)	34, 190, 264, 456, 566
TasI	AATT	3 cut(s)	399, 507, 544
TauI	GCSGC	5 cut(s)	44, 57, 137, 218, 439
TfiI	GAWTC	1 cut(s)	619
TscAI	CASTG	2 cut(s)	329, 457
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	331, 500
TspRI	CASTG	2 cut(s)	329, 457
VpaK11BI	GGWCC	2 cut(s)	346, 561
XagI	CCTNNNNNAGG	1 cut(s)	257
XspI	CTAG	3 cut(s)	203, 440, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.