Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003205

Physical Location & Seq

Genomic Coordinates Reverse (-)

7545724 .. 7548315

Gene Structure 2592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCAGCTGAGCTACAGCCACTGGAAGCTCCAATCACCGCCGGCCCGACAATTCTAACCACCACAACGACAGAACCGATAAATACAGCAACAACCTTAACTGCCACAACGGCAATAGCAACCACAACGGCCATACACACCGCGGAGAACCACGGCCCTCAATTGGGCCCCAAACGGCAGCGCCGCCCCAGCGTCCGATTAGGCGAAATCGGCGATCAGCCCGCCGCCACTGCCTCATTTGAATCACATATGCGACGAGCCAGGCCCAGCTGGAGGCTCCCCAAGGACTCCAAATCGGTGAAGGCCCGGTCAATCACCAACCTCGTCAATGGCAACGAGTCCAACGAAACGACGCCGCACGATGAGAGGAACCAAAACGGAGACGGAGGTTTCGAGTTCGGGGGCCGGAGATTCAAGGCGAAGCGAGCCACGGGGACCAAGAGGGTCCGATCGAAGTGGGCTTCCAATTCGAAGCTCGACGACGGCGGCGACAGCAGAGAGGAGGGAGGAGAGTGGTTCAGCATGGACCCCGATCAGGATAGTCCGGTGAGGGACAGCAGCCCGCTGAACTCGGGGGACGACACGGGGCAGGATATGTGGGATGGGCAGAGGAGGATGGCGGGAAACTGGGCTAGGGCGTCGGAGAGTAGGGAGAACGACGCTGTTGAGGCGGATAACATGCCGGAGTCGAATTGGAGTGGAGTGAGGTCGTGGCTGATAGAATTGGGGCTGAGCCGGTACACGCCGGTGTTCGAGATACATGAGGTGGACGACGAGGTGCTGCCGATGCTGACATTGGAGGATCTTAAGGATATGGGAATCAACGCCGTTGGTTCGCGGCGGAAAATGTATGCCGCCATTCAGAAGCTCCGCAAGGGGTTCTCGAGGAAAATTGGATGCACTCATCTGGGCTGTGTGCTTGGAGGCCACGGCCATTTCTTAGAAAGTCATCGTTGGTCATCGTCAACTTCCTTATTACAAGCAGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

331

Amino Acids

36.3

Weight (kDa)

6.33

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	234 - 291	4.3e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	235 - 291	3.7e-13	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48800 AT5G23680
fragaria_vesca	FvH4_4g22930 FvH4_5g09120 FvH4_5g09120
malus_domestica	MD04G1000300.v1.1 MD06G1133400.v1.1 MD13G1128000.v1.1 MD13G1128300.v1.1 MD14G1149800.v1.1 MD16G1128400.v1.1
prunus_persica	Prupe.5G144600_v2.0.a1 Prupe.5G144600_v2.0.a1
pyrus_communis	pycom13g11100 pycom14g12450 pycom16g10890
rosa_chinensis	RchiOBHm_Chr4g0429181 RchiOBHm_Chr7g0189071
rosa_laevigata	RLG00000004635 RLG00000007089
rosa_multiflora	Rmu_co7993242.1_g000001 Rmu_co8485617.1_g000001 Rmu_sc0004290.1_g000008 Rmu_sc0004872.1_g000001
rosa_rugosa	Rorug04G0233700 Rorug06G0496000
rosa_samantha	Rh4AG289600 Rh4BG295600 Rh4CG311100 Rh4DG292500 Rh7AG100400 Rh7BG102900 Rh7CG104400 Rh7DG102400
rosa_wichuraiana	Rw4G025090 Rw5G022550 Rw7G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	143, 838
AclWI	GGATC	1 cut(s)	810
AcoI	YGGCCR	2 cut(s)	129, 931
AcyI	GRCGYC	2 cut(s)	353, 638
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	4 cut(s)	163, 164, 273, 535
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	2 cut(s)	242, 415
AjnI	CCWGG	1 cut(s)	260
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	6 cut(s)	8, 13, 29, 270, 475, 868
AluI	AGCT	6 cut(s)	8, 13, 29, 270, 475, 868
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	810
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	2 cut(s)	571, 883
AoxI	GGCC	9 cut(s)	43, 129, 154, 166, 263, 303, 403, 925, 931
ApaI	GGGCCC	1 cut(s)	170
ApeKI	GCWGC	4 cut(s)	5, 178, 558, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	4 cut(s)	28, 307, 310, 559
AsuII	TTCGAA	1 cut(s)	470
AvaI	CYCGRG	2 cut(s)	571, 883
AvaII	GGWCC	3 cut(s)	435, 445, 526
BaeGI	GKGCMC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	170
BbvI	GCAGC	4 cut(s)	17, 190, 570, 768
BccI	CCATC	2 cut(s)	596, 610
BceAI	ACGGC	7 cut(s)	126, 144, 169, 191, 499, 812, 946
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	184
BfrI	CTTAAG	1 cut(s)	806
BglI	GCCNNNNNGGC	1 cut(s)	110
BlpI	GCTNAGC	2 cut(s)	9, 731
Bme1390I	CCNGG	2 cut(s)	262, 307
Bme18I	GGWCC	3 cut(s)	435, 445, 526
BmeT110I	CYCGRG	2 cut(s)	571, 883
BmiI	GGNNCC	8 cut(s)	168, 169, 278, 371, 404, 436, 446, 528
BmrFI	CCNGG	2 cut(s)	262, 307
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	2 cut(s)	777, 887
BmuI	ACTGGG	1 cut(s)	637
BpmI	CTGGAG	1 cut(s)	292
Bpu1102I	GCTNAGC	2 cut(s)	9, 731
Bpu14I	TTCGAA	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	307
BsaHI	GRCGYC	2 cut(s)	353, 638
BsaJI	CCNNGG	5 cut(s)	141, 151, 282, 429, 928
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 164, 273, 535
Bse118I	RCCGGY	3 cut(s)	41, 735, 745
Bse1I	ACTGG	2 cut(s)	27, 632
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	5 cut(s)	141, 151, 282, 429, 928
BseGI	GGATG	3 cut(s)	607, 621, 902
BseLI	CCNNNNNNNGG	4 cut(s)	163, 164, 273, 535
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	2 cut(s)	27, 632
BseRI	GAGGAG	3 cut(s)	515, 522, 625
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	4 cut(s)	17, 190, 570, 768
BseYI	CCCAGC	2 cut(s)	188, 266
Bsh1236I	CGCG	2 cut(s)	143, 838
Bsh1285I	CGRYCG	1 cut(s)	452
BshFI	GGCC	9 cut(s)	45, 131, 156, 168, 265, 305, 405, 927, 933
BsiEI	CGRYCG	1 cut(s)	452
BsiHKCI	CYCGRG	2 cut(s)	571, 883
BsiSI	CCGG	7 cut(s)	42, 307, 406, 545, 683, 736, 746
BslFI	GGGAC	3 cut(s)	448, 566, 590
BslI	CCNNNNNNNGG	4 cut(s)	163, 164, 273, 535
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	3 cut(s)	448, 566, 590
BsnI	GGCC	9 cut(s)	45, 131, 156, 168, 265, 305, 405, 927, 933
BsoBI	CYCGRG	2 cut(s)	571, 883
Bsp119I	TTCGAA	1 cut(s)	470
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	4 cut(s)	214, 449, 532, 802
Bsp1720I	GCTNAGC	2 cut(s)	9, 731
BspANI	GGCC	9 cut(s)	45, 131, 156, 168, 265, 305, 405, 927, 933
BspCNI	CTCAG	1 cut(s)	723
BspFNI	CGCG	2 cut(s)	143, 838
BspLI	GGNNCC	8 cut(s)	168, 169, 278, 371, 404, 436, 446, 528
BspPI	GGATC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	470
BspTI	CTTAAG	1 cut(s)	806
BsrFI	RCCGGY	3 cut(s)	41, 735, 745
BsrI	ACTGG	2 cut(s)	27, 632
BssAI	RCCGGY	3 cut(s)	41, 735, 745
BssECI	CCNNGG	5 cut(s)	141, 151, 282, 429, 928
BssMI	GATC	4 cut(s)	214, 449, 532, 802
BssNI	GRCGYC	2 cut(s)	353, 638
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	262
BstACI	GRCGYC	2 cut(s)	353, 638
BstAFI	CTTAAG	1 cut(s)	806
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	4 cut(s)	43, 222, 426, 563
BstDEI	CTNAG	3 cut(s)	9, 731, 940
BstDSI	CCRYGG	4 cut(s)	141, 151, 429, 928
BstF5I	GGATG	3 cut(s)	607, 621, 902
BstFNI	CGCG	2 cut(s)	143, 838
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	217, 452, 535, 805
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	4 cut(s)	214, 449, 532, 802
BstMCI	CGRYCG	1 cut(s)	452
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 189, 210, 230, 425, 492, 668, 787
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	2 cut(s)	260, 305
BstSFI	CTRYAG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	2 cut(s)	143, 838
BstV1I	GCAGC	4 cut(s)	17, 190, 570, 768
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuRI	GGCC	9 cut(s)	45, 131, 156, 168, 265, 305, 405, 927, 933
BtgI	CCRYGG	4 cut(s)	141, 151, 429, 928
BtsCI	GGATG	3 cut(s)	607, 621, 902
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	20, 228
Cac8I	GCNNGC	4 cut(s)	43, 222, 426, 563
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	3 cut(s)	41, 735, 745
Cfr42I	CCGCGG	1 cut(s)	144
CseI	GACGC	4 cut(s)	181, 361, 627, 668
Csp6I	GTAC	1 cut(s)	739
CviAII	CATG	3 cut(s)	523, 679, 761
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	3 cut(s)	9, 731, 940
DpnI	GATC	4 cut(s)	216, 451, 534, 804
DpnII	GATC	4 cut(s)	214, 449, 532, 802
EaeI	YGGCCR	2 cut(s)	129, 931
EciI	GGCGGA	2 cut(s)	686, 856
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	3 cut(s)	435, 445, 526
Eco88I	CYCGRG	2 cut(s)	571, 883
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	3 cut(s)	526, 682, 764
FaiI	YATR	9 cut(s)	134, 249, 251, 524, 596, 680, 762, 815, 852
FaqI	GGGAC	3 cut(s)	448, 566, 590
FatI	CATG	3 cut(s)	522, 678, 760
FauI	CCCGC	3 cut(s)	229, 570, 613
FauNDI	CATATG	1 cut(s)	249
FokI	GGATG	3 cut(s)	614, 628, 909
FriOI	GRGCYC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	182
GsaI	CCCAGC	2 cut(s)	192, 270
GsuI	CTGGAG	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	9 cut(s)	45, 131, 156, 168, 265, 305, 405, 927, 933
HapII	CCGG	7 cut(s)	42, 307, 406, 545, 683, 736, 746
HgaI	GACGC	4 cut(s)	181, 361, 627, 668
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	2 cut(s)	353, 638
Hin1II	CATG	3 cut(s)	526, 682, 764
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	966
HindII	GTYRAC	1 cut(s)	966
HinfI	GANTC	6 cut(s)	242, 287, 338, 411, 686, 819
HpaII	CCGG	7 cut(s)	42, 307, 406, 545, 683, 736, 746
HphI	GGTGA	4 cut(s)	28, 307, 310, 559
Hpy166II	GTNNAC	3 cut(s)	741, 769, 966
Hpy188I	TCNGA	4 cut(s)	197, 449, 643, 864
Hpy188III	TCNNGA	3 cut(s)	536, 754, 883
Hpy8I	GTNNAC	3 cut(s)	741, 769, 966
Hpy99I	CGWCG	7 cut(s)	258, 355, 482, 485, 643, 662, 776
HpyAV	CCTTC	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	900
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 189, 210, 230, 425, 492, 668, 787
HpyF3I	CTNAG	3 cut(s)	9, 731, 940
Hsp92I	GRCGYC	2 cut(s)	353, 638
Hsp92II	CATG	3 cut(s)	526, 682, 764
HspAI	GCGC	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
KspI	CCGCGG	1 cut(s)	144
Kzo9I	GATC	4 cut(s)	214, 449, 532, 802
LmnI	GCTCC	3 cut(s)	34, 282, 873
Lsp1109I	GCAGC	4 cut(s)	17, 190, 570, 768
LweI	GCATC	2 cut(s)	777, 887
MaeI	CTAG	1 cut(s)	633
MalI	GATC	4 cut(s)	216, 451, 534, 804
MboI	GATC	4 cut(s)	214, 449, 532, 802
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	6 cut(s)	51, 161, 466, 691, 722, 891
MlyI	GAGTC	3 cut(s)	281, 347, 695
MmeI	TCCRAC	2 cut(s)	366, 621
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	2 cut(s)	98, 807
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	4 cut(s)	8, 143, 270, 565
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	7 cut(s)	42, 307, 406, 545, 683, 736, 746
MspR9I	CCNGG	2 cut(s)	262, 307
MunI	CAATTG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	2 cut(s)	143, 838
MwoI	GCNNNNNNNGC	8 cut(s)	110, 189, 210, 230, 425, 492, 668, 787
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	4 cut(s)	214, 449, 532, 802
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	3 cut(s)	526, 682, 764
NlaIV	GGNNCC	8 cut(s)	168, 169, 278, 371, 404, 436, 446, 528
NspI	RCATGY	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	470
OliI	CACNNNNGTG	1 cut(s)	746
PaeR7I	CTCGAG	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	4 cut(s)	74, 342, 390, 486
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	242, 411, 819
Ple19I	CGATCG	1 cut(s)	452
PleI	GAGTC	3 cut(s)	281, 346, 694
PpsI	GAGTC	3 cut(s)	281, 346, 694
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	2 cut(s)	188, 266
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	8 cut(s)	168, 169, 278, 371, 404, 436, 446, 528
PspOMI	GGGCCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	802
PvuI	CGATCG	1 cut(s)	452
PvuII	CAGCTG	2 cut(s)	8, 270
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
RseI	CAYNNNNRTG	1 cut(s)	746
SacII	CCGCGG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	98, 807
Sau3AI	GATC	4 cut(s)	214, 449, 532, 802
SchI	GAGTC	3 cut(s)	281, 347, 695
ScrFI	CCNGG	2 cut(s)	262, 307
SduI	GDGCHC	1 cut(s)	170
SfaNI	GCATC	2 cut(s)	777, 887
SfcI	CTRYAG	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	883
Sfr303I	CCGCGG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	470
SgrAI	CRCCGGYG	1 cut(s)	745
SgrBI	CCGCGG	1 cut(s)	144
SinI	GGWCC	3 cut(s)	435, 445, 526
SlaI	CTCGAG	1 cut(s)	883
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	2 cut(s)	806, 883
SmoI	CTYRAG	2 cut(s)	806, 883
Sse9I	AATT	6 cut(s)	51, 161, 466, 691, 722, 891
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	2 cut(s)	260, 305
StyI	CCWWGG	1 cut(s)	282
TaqI	TCGA	7 cut(s)	393, 452, 470, 477, 689, 753, 884
TasI	AATT	6 cut(s)	51, 161, 466, 691, 722, 891
TauI	GCSGC	6 cut(s)	186, 227, 358, 489, 841, 857
TfiI	GAWTC	3 cut(s)	242, 411, 819
Tru1I	TTAA	2 cut(s)	98, 807
Tru9I	TTAA	2 cut(s)	98, 807
TscAI	CASTG	2 cut(s)	27, 235
TseI	GCWGC	4 cut(s)	5, 178, 558, 781
TspGWI	ACGGA	2 cut(s)	393, 399
TspRI	CASTG	2 cut(s)	27, 235
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	3 cut(s)	435, 445, 526
XceI	RCATGY	1 cut(s)	682
XhoI	CTCGAG	1 cut(s)	883
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.