Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

13510316 .. 13511784

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGACGAGCATGCTTGGAGTTGAGTGTGATTTGAACCTCAGAGAGACTGAGCTGTGCCTAGGGCTGCCTGGTGGTGGTACTTCTACTGTGGCTGAGCCGGAGACTAAGGCTACCGGAAAGAGAGGCTTCTCTGAGACCGTTGATCTCAAGCTCAACCTTCAGTCCAAGGAAGATCTGAATGACAATGTAAAAAATATTGCTTCCAGGGAGAAGAACGACCTCCGTTCTTGCACAAAAGATCCAGCAAAGCCTCCAGCCAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCATACCGAAAGAACATAATGGCGCAGAAGAACACCAGCGAGGAAAACACTGAGAAGGCAACCGTCGGTGGTGGAGGCTGCAGCGCTGCATTTGTGAAGGTTTGCATGGATGGCGCTCCATATCTTCGTAAGGTGGATTTGAAGACGTACAAGAGTTACCAAGAGCTCTCTAATGCCTTAGCCAAGATGTTCAGTTCCTTCACCACCGGGGGCCCAAGGAATGATAGACTTCATGAACGAGAGCAAGTTGATGGATCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

185

Amino Acids

20.01

Weight (kDa)

8.55

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	15 - 178	3.2e-46	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	233, 553
AcoI	YGGCCR	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	79, 440
AfeI	AGCGCT	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	34, 433
AjnI	CCWGG	2 cut(s)	67, 203
AluBI	AGCT	3 cut(s)	52, 151, 457
AluI	AGCT	3 cut(s)	52, 151, 457
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	3 cut(s)	38, 95, 128
AlwI	GGATC	2 cut(s)	233, 553
Aor51HI	AGCGCT	1 cut(s)	376
AoxI	GGCC	2 cut(s)	278, 502
ApaI	GGGCCC	1 cut(s)	506
ApeKI	GCWGC	4 cut(s)	64, 369, 372, 377
AspA2I	CCTAGG	1 cut(s)	58
AspLEI	GCGC	3 cut(s)	316, 377, 407
AspS9I	GGNCC	2 cut(s)	502, 503
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	484
AvrII	CCTAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	459, 506
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	51, 356, 364, 384
BccI	CCATC	2 cut(s)	395, 536
BciT130I	CCWGG	2 cut(s)	69, 205
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	38, 95, 128
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	2 cut(s)	378, 408
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	4 cut(s)	65, 370, 373, 378
BlnI	CCTAGG	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	4 cut(s)	66, 371, 374, 379
Bme1390I	CCNGG	3 cut(s)	69, 205, 499
BmgT120I	GGNCC	2 cut(s)	502, 503
BmiI	GGNNCC	2 cut(s)	503, 504
BmrFI	CCNGG	3 cut(s)	69, 205, 499
BpiI	GAAGAC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	469
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	6 cut(s)	58, 165, 204, 258, 498, 506
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	284
BseBI	CCWGG	2 cut(s)	69, 205
BseDI	CCNNGG	6 cut(s)	58, 165, 204, 258, 498, 506
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	5 cut(s)	39, 52, 84, 123, 333
BseNI	ACTGG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	4 cut(s)	51, 356, 364, 384
BshFI	GGCC	2 cut(s)	280, 504
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	98, 114, 498
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	3 cut(s)	38, 95, 128
BsnI	GGCC	2 cut(s)	280, 504
Bso31I	GGTCTC	1 cut(s)	128
Bsp120I	GGGCCC	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	459, 506
Bsp143I	GATC	5 cut(s)	142, 172, 238, 290, 545
Bsp1720I	GCTNAGC	1 cut(s)	93
BspANI	GGCC	2 cut(s)	280, 504
BspCNI	CTCAG	5 cut(s)	40, 51, 85, 124, 334
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	503, 504
BspMAI	CTGCAG	1 cut(s)	374
BspPI	GGATC	2 cut(s)	233, 553
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	6 cut(s)	58, 165, 204, 258, 498, 506
BssMI	GATC	5 cut(s)	142, 172, 238, 290, 545
BssT1I	CCWWGG	4 cut(s)	58, 165, 258, 506
Bst2UI	CCWGG	2 cut(s)	69, 205
Bst4CI	ACNGT	3 cut(s)	88, 139, 355
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	7 cut(s)	38, 48, 93, 105, 132, 342, 469
BstF5I	GGATG	1 cut(s)	406
BstH2I	RGCGCY	2 cut(s)	378, 408
BstHHI	GCGC	3 cut(s)	316, 377, 407
BstKTI	GATC	5 cut(s)	145, 175, 241, 293, 548
BstMAI	GTCTC	3 cut(s)	38, 95, 128
BstMBI	GATC	5 cut(s)	142, 172, 238, 290, 545
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNI	CCWGG	2 cut(s)	69, 205
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	3 cut(s)	67, 203, 497
BstSFI	CTRYAG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	4 cut(s)	51, 356, 364, 384
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	3 cut(s)	172, 238, 545
BstYI	RGATCY	3 cut(s)	172, 238, 545
BsuRI	GGCC	2 cut(s)	280, 504
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	3 cut(s)	316, 377, 407
Cfr13I	GGNCC	2 cut(s)	502, 503
Csp6I	GTAC	2 cut(s)	78, 439
CviAII	CATG	3 cut(s)	10, 397, 524
CviQI	GTAC	2 cut(s)	78, 439
DdeI	CTNAG	7 cut(s)	38, 48, 93, 105, 132, 342, 469
DpnI	GATC	5 cut(s)	144, 174, 240, 292, 547
DpnII	GATC	5 cut(s)	142, 172, 238, 290, 545
EaeI	YGGCCR	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	4 cut(s)	58, 165, 258, 506
Eco24I	GRGCYC	2 cut(s)	459, 506
Eco31I	GGTCTC	1 cut(s)	128
Eco47III	AGCGCT	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	67, 203
EcoT14I	CCWWGG	4 cut(s)	58, 165, 258, 506
EcoT38I	GRGCYC	2 cut(s)	459, 506
ErhI	CCWWGG	4 cut(s)	58, 165, 258, 506
FaeI	CATG	3 cut(s)	13, 400, 527
FaiI	YATR	6 cut(s)	11, 295, 308, 398, 412, 525
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	3 cut(s)	9, 396, 523
Fnu4HI	GCNGC	4 cut(s)	65, 370, 373, 378
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	2 cut(s)	459, 506
Fsp4HI	GCNGC	4 cut(s)	65, 370, 373, 378
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	3 cut(s)	315, 376, 406
GluI	GCNGC	4 cut(s)	65, 370, 373, 378
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	2 cut(s)	378, 408
HaeIII	GGCC	2 cut(s)	280, 504
HapII	CCGG	3 cut(s)	98, 114, 498
HhaI	GCGC	3 cut(s)	316, 377, 407
Hin1II	CATG	3 cut(s)	13, 400, 527
Hin6I	GCGC	3 cut(s)	314, 375, 405
HinP1I	GCGC	3 cut(s)	314, 375, 405
HpaII	CCGG	3 cut(s)	98, 114, 498
HphI	GGTGA	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	41, 133, 177
Hpy188III	TCNNGA	1 cut(s)	524
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	4 cut(s)	167, 340, 382, 499
HpyCH4III	ACNGT	3 cut(s)	88, 139, 355
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	4 cut(s)	231, 372, 380, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpyF3I	CTNAG	7 cut(s)	38, 48, 93, 105, 132, 342, 469
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	3 cut(s)	13, 400, 527
HspAI	GCGC	3 cut(s)	314, 375, 405
Kzo9I	GATC	5 cut(s)	142, 172, 238, 290, 545
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	4 cut(s)	51, 356, 364, 384
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	5 cut(s)	144, 174, 240, 292, 547
MboI	GATC	5 cut(s)	142, 172, 238, 290, 545
MboII	GAAGA	6 cut(s)	182, 223, 331, 407, 445, 540
MflI	RGATCY	3 cut(s)	172, 238, 545
MhlI	GDGCHC	2 cut(s)	459, 506
MlsI	TGGCCA	1 cut(s)	280
MluNI	TGGCCA	1 cut(s)	280
MnlI	CCTC	6 cut(s)	47, 116, 230, 261, 325, 359
Mox20I	TGGCCA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	1 cut(s)	553
Msp20I	TGGCCA	1 cut(s)	280
MspI	CCGG	3 cut(s)	98, 114, 498
MspR9I	CCNGG	3 cut(s)	69, 205, 499
MvaI	CCWGG	2 cut(s)	69, 205
MwoI	GCNNNNNNNGC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	499
NdeII	GATC	5 cut(s)	142, 172, 238, 290, 545
NlaIII	CATG	3 cut(s)	13, 400, 527
NlaIV	GGNNCC	2 cut(s)	503, 504
NspI	RCATGY	1 cut(s)	13
PaeI	GCATGC	1 cut(s)	13
PagI	TCATGA	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PkrI	GCNGC	4 cut(s)	66, 371, 374, 379
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	67, 203
PspGI	CCWGG	2 cut(s)	67, 203
PspN4I	GGNNCC	2 cut(s)	503, 504
PspOMI	GGGCCC	1 cut(s)	502
PspPI	GGNCC	2 cut(s)	502, 503
PstI	CTGCAG	1 cut(s)	374
PsuI	RGATCY	3 cut(s)	172, 238, 545
RsaI	GTAC	2 cut(s)	79, 440
RsaNI	GTAC	2 cut(s)	78, 439
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	553
SatI	GCNGC	4 cut(s)	65, 370, 373, 378
Sau3AI	GATC	5 cut(s)	142, 172, 238, 290, 545
Sau96I	GGNCC	2 cut(s)	502, 503
ScrFI	CCNGG	3 cut(s)	69, 205, 499
SduI	GDGCHC	2 cut(s)	459, 506
SetI	ASST	9 cut(s)	39, 54, 153, 159, 222, 393, 426, 440, 459
SfcI	CTRYAG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	13
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	67, 203, 497
StyI	CCWWGG	4 cut(s)	58, 165, 258, 506
TaaI	ACNGT	3 cut(s)	88, 139, 355
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	4 cut(s)	64, 369, 372, 377
TspDTI	ATGAA	2 cut(s)	512, 540
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	346
XceI	RCATGY	1 cut(s)	13
XmaJI	CCTAGG	1 cut(s)	58
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.