Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Forward (+)

4548439 .. 4555592

Gene Structure 7154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAATTTTTTTTTCCTTCTAGATCTTGAGTGCATATTCACTGTTATCTGCAATGTTGTTACAAAGTCTGAAAGTCCAGATGAAGCACTGGAGATGGCAAAACTTATATCCTCAAAGATTACTCAAAAACCAACCGACAAGCCTGCATTGCGCTTAAAGATTTTGTTCAATCTGTACAACCTACTGGAGAACCCATATAGCCGGTTCTTAGTCTACTTGAGTGCTCTTAATTTGGCTATCCATGGGAAGGTCACTGAACATGTCATCCCTTCATTCAAAAATGTGGAAAGTTTTTTGAAAGAGTGGAGTATTGAGATCTCTGATCAGAGGCAGTTATTTCTGACCATCGCTAATGTTCTGAAAGAACACAAAAACTTGGCAAAGGAGTCTTTCAAATTCCTGACCAAGTACTTGGCGACATTTTCTGGCGAAGATGTGCATACGTTGAGTGAAGCCAAAGAGGAAGCTATACGTACAATTGTGGAATTTGTGAAGGCCCCAGACATGTTTCAGTGTGATTTGCTAAATTTGCCTGCTGTAGAGCAACTGGAGAAGGATGCTAAGCATGCATTGGCATATCAGCTTTTGAAGATCTTTCTGACTCAGAGGCTGGATGCTTACTTGGAGTTTCAGGCTGCAAATTCTGATTTACTGAAAAGCTACGGTCTTGTCCATGAAGACTGCATAACTAAGATGAGGTTGATTTCCTTGATGGATCTTGGTTCTGATGAATCTGGACGGATTCCTTACGGTGCTATCAGGGATACTCTTCAGATTAATGATGACGAAGTTGAACTTTGGGTGGTAAAGGCAATAACTGCTAAGTTGATGGACTGTAAAATGGACCAGATGAATCAAGTGGTGATTGTGAGTCGCTGTACTGAGAGAGTATTTGGGGAAGAACAATGGCTTACACTAAGAACAAAGTTAGCAACTTGGAGGGGTAATATTGCAAACGTTATCAGCAACATTCGAGCTAACAGGATAGCTGATGATGGATCACAGGCAGTGCAAGGCTTAGTTATTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

344

Amino Acids

39.16

Weight (kDa)

5.66

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	214 - 292	1.8e-12	PCI domain
eIF3m_C_helix	PF18005	296 - 322	8.5e-12	eIF3 subunit M, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AclI	AACGTT	1 cut(s)	957
AclWI	GGATC	2 cut(s)	723, 1006
AcsI	RAATTY	5 cut(s)	4, 395, 485, 526, 640
AcuI	CTGAAG	1 cut(s)	755
AfaI	GTAC	4 cut(s)	176, 410, 475, 880
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflIII	ACRYGT	2 cut(s)	259, 504
AgsI	TTSAA	6 cut(s)	169, 277, 298, 394, 589, 794
AloI	GAACNNNNNNTCC	2 cut(s)	249, 281
AluBI	AGCT	5 cut(s)	467, 583, 660, 977, 989
AluI	AGCT	5 cut(s)	467, 583, 660, 977, 989
Alw21I	GWGCWC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	723, 1006
AlwNI	CAGNNNCTG	1 cut(s)	610
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	5 cut(s)	4, 395, 485, 526, 640
AseI	ATTAAT	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	496, 844
AsuHPI	GGTGA	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	844
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	5 cut(s)	88, 353, 706, 823, 989
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciVI	GTATCC	1 cut(s)	757
BclI	TGATCA	1 cut(s)	322
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	757
BglII	AGATCT	3 cut(s)	22, 315, 591
BisI	GCNGC	1 cut(s)	636
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	637
BmcAI	AGTACT	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	844
BmgT120I	GGNCC	2 cut(s)	496, 844
BmiI	GGNNCC	1 cut(s)	498
BmsI	GCATC	2 cut(s)	547, 604
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	3 cut(s)	110, 206, 569
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	47, 238
BsaAI	YACGTR	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	93, 189, 552
Bse3DI	GCAATG	2 cut(s)	58, 146
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	3 cut(s)	264, 562, 619
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	2 cut(s)	58, 146
BseMII	CTCAG	2 cut(s)	617, 873
BseNI	ACTGG	3 cut(s)	93, 189, 552
BseXI	GCAGC	1 cut(s)	622
BshFI	GGCC	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	247
BsnI	GGCC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	6 cut(s)	22, 315, 322, 591, 715, 998
Bsp1720I	GCTNAGC	1 cut(s)	561
Bsp19I	CCATGG	1 cut(s)	241
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	2 cut(s)	616, 874
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	2 cut(s)	723, 1006
BsrDI	GCAATG	2 cut(s)	58, 146
BsrFI	RCCGGY	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	93, 189, 552
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	6 cut(s)	22, 315, 322, 591, 715, 998
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	4 cut(s)	43, 665, 752, 836
Bst6I	CTCTTC	1 cut(s)	774
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstAUI	TGTACA	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	144, 534, 567
BstDEI	CTNAG	8 cut(s)	208, 561, 603, 690, 822, 882, 917, 1018
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	264, 562, 619
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	6 cut(s)	25, 318, 325, 594, 718, 1001
BstMBI	GATC	6 cut(s)	22, 315, 322, 591, 715, 998
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 529, 566, 818
BstNSI	RCATGY	3 cut(s)	263, 508, 569
BstSFI	CTRYAG	1 cut(s)	537
BstSNI	TACGTA	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	622
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	4 cut(s)	22, 315, 591, 715
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	4 cut(s)	22, 315, 591, 715
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	1 cut(s)	497
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	264, 562, 619
BtsI	GCAGTG	1 cut(s)	1014
BtsIMutI	CAGTG	5 cut(s)	39, 86, 252, 518, 1014
Cac8I	GCNNGC	3 cut(s)	144, 534, 567
CaiI	CAGNNNCTG	1 cut(s)	610
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	496, 844
Csp6I	GTAC	4 cut(s)	175, 409, 474, 879
CviAII	CATG	5 cut(s)	242, 260, 505, 566, 674
CviQI	GTAC	4 cut(s)	175, 409, 474, 879
DdeI	CTNAG	8 cut(s)	208, 561, 603, 690, 822, 882, 917, 1018
DpnI	GATC	6 cut(s)	24, 317, 324, 593, 717, 1000
DpnII	GATC	6 cut(s)	22, 315, 322, 591, 715, 998
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco105I	TACGTA	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	5 cut(s)	245, 263, 508, 569, 677
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FatI	CATG	5 cut(s)	241, 259, 504, 565, 673
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	3 cut(s)	251, 569, 626
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	636
GsuI	CTGGAG	3 cut(s)	110, 206, 569
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	245, 263, 508, 569, 677
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	6 cut(s)	386, 601, 731, 742, 853, 871
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188III	TCNNGA	5 cut(s)	20, 26, 77, 400, 735
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	5 cut(s)	26, 241, 279, 487, 547
HpyCH4III	ACNGT	4 cut(s)	43, 665, 752, 836
HpyCH4IV	ACGT	3 cut(s)	443, 472, 957
HpyCH4V	TGCA	9 cut(s)	33, 51, 146, 439, 569, 638, 684, 953, 1012
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 529, 566, 818
HpyF3I	CTNAG	8 cut(s)	208, 561, 603, 690, 822, 882, 917, 1018
HpySE526I	ACGT	3 cut(s)	443, 472, 957
Hsp92II	CATG	5 cut(s)	245, 263, 508, 569, 677
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	6 cut(s)	22, 315, 322, 591, 715, 998
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	2 cut(s)	547, 604
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	3 cut(s)	443, 472, 957
MaeIII	GTNAC	2 cut(s)	58, 250
MalI	GATC	6 cut(s)	24, 317, 324, 593, 717, 1000
MboI	GATC	6 cut(s)	22, 315, 322, 591, 715, 998
MboII	GAAGA	5 cut(s)	443, 601, 689, 761, 911
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	4 cut(s)	22, 315, 591, 715
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	7 cut(s)	4, 229, 395, 477, 485, 526, 640
MlyI	GAGTC	3 cut(s)	395, 595, 880
MnlI	CCTC	6 cut(s)	121, 321, 454, 600, 690, 933
Mph1103I	ATGCAT	1 cut(s)	571
MseI	TTAA	3 cut(s)	155, 228, 777
MspI	CCGG	1 cut(s)	202
MunI	CAATTG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	148, 529, 566, 818
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	6 cut(s)	22, 315, 322, 591, 715, 998
NlaIII	CATG	5 cut(s)	245, 263, 508, 569, 677
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	3 cut(s)	263, 508, 569
PaeI	GCATGC	1 cut(s)	569
PciI	ACATGT	2 cut(s)	259, 504
PfeI	GAWTC	3 cut(s)	731, 742, 853
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	3 cut(s)	394, 595, 879
PpsI	GAGTC	3 cut(s)	394, 595, 879
Ppu21I	YACGTR	1 cut(s)	473
PscI	ACATGT	2 cut(s)	259, 504
PshBI	ATTAAT	1 cut(s)	777
Psp1406I	AACGTT	1 cut(s)	957
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	2 cut(s)	496, 844
PstNI	CAGNNNCTG	1 cut(s)	610
PsuI	RGATCY	4 cut(s)	22, 315, 591, 715
RsaI	GTAC	4 cut(s)	176, 410, 475, 880
RsaNI	GTAC	4 cut(s)	175, 409, 474, 879
SaqAI	TTAA	3 cut(s)	155, 228, 777
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	6 cut(s)	22, 315, 322, 591, 715, 998
Sau96I	GGNCC	2 cut(s)	496, 844
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	3 cut(s)	395, 595, 880
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	547, 604
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	844
SmlI	CTYRAG	2 cut(s)	26, 217
SmoI	CTYRAG	2 cut(s)	26, 217
SnaBI	TACGTA	1 cut(s)	473
SphI	GCATGC	1 cut(s)	569
Sse9I	AATT	7 cut(s)	4, 229, 395, 477, 485, 526, 640
SspI	AATATT	1 cut(s)	949
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	4 cut(s)	43, 665, 752, 836
TaiI	ACGT	3 cut(s)	446, 475, 960
TaqI	TCGA	1 cut(s)	973
TasI	AATT	7 cut(s)	4, 229, 395, 477, 485, 526, 640
TatI	WGTACW	3 cut(s)	174, 408, 878
TfiI	GAWTC	3 cut(s)	731, 742, 853
Tru1I	TTAA	3 cut(s)	155, 228, 777
Tru9I	TTAA	3 cut(s)	155, 228, 777
TscAI	CASTG	5 cut(s)	46, 93, 259, 518, 1014
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	6 cut(s)	17, 96, 261, 690, 744, 866
TspGWI	ACGGA	1 cut(s)	754
TspRI	CASTG	5 cut(s)	46, 93, 259, 518, 1014
VpaK11BI	GGWCC	1 cut(s)	844
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	5 cut(s)	4, 395, 485, 526, 640
XbaI	TCTAGA	1 cut(s)	19
XceI	RCATGY	3 cut(s)	263, 508, 569
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.