pycom17g17420

Leucine rich repeat

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15151917 .. 15152405
489 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17420.3

Sequence Viewer

Length: 405 bp
ATGACAGTACGTGTCGATAATATGAACTTAGTTAAAACCCCTCAAGAGCTCAATAAAACTGTTGAATATCTAAAAAATGAATATGAAATGAAAGACATTAGGAAAGAAAATATTGTTTCGGCCTGCAAATCGATGAAAAAATCCTATAGCGATTTAGCATGGACAAGACTTATCCACTTAGCACGCCAATGGTCGTTCGGTGAAATAGTCCTTGGTCCAGTAGTATCATATCTATGTGCAATGAGTGCTTTATTGTATTTAGCACAATGTACTAGACCAGCAGTAGTACCATATCTATGTGCAATAAGTGCTTTATTGTATTTAGCACAATGCACTAGACCAGATATAGCTTTTTCAACCAACTTGTTAGCAAGGTATAGCTCTGCTCTAACAATTCGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.25

Weight (kDa)

9.16

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 9, 271, 288
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 65, 357
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 3 cut(s) 49, 350, 381
AluI AGCT 3 cut(s) 49, 350, 381
Alw21I GWGCWC 1 cut(s) 51
AoxI GGCC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BfaI CTAG 2 cut(s) 273, 336
BfmI CTRYAG 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 218
BshFI GGCC 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 51
BsnI GGCC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 51
BspANI GGCC 1 cut(s) 122
BspDI ATCGAT 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 211
Bst4CI ACNGT 2 cut(s) 7, 61
BstAPI GCANNNNNTGC 2 cut(s) 245, 308
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 124, 184
BstDEI CTNAG 2 cut(s) 28, 178
BstMWI GCNNNNNNNGC 2 cut(s) 245, 308
BstSFI CTRYAG 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 131
BsuRI GGCC 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 124, 184
Cfr13I GGNCC 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 131
Csp6I GTAC 3 cut(s) 8, 270, 287
CviAII CATG 1 cut(s) 159
CviJI RGCY 4 cut(s) 49, 122, 350, 381
CviKI_1 RGCY 4 cut(s) 49, 122, 350, 381
CviQI GTAC 3 cut(s) 8, 270, 287
DdeI CTNAG 2 cut(s) 28, 178
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 1 cut(s) 162
FatI CATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 2 cut(s) 273, 336
HaeIII GGCC 1 cut(s) 122
Hin1II CATG 1 cut(s) 162
HphI GGTGA 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 7, 61
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 4 cut(s) 126, 239, 302, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 308
HpyF3I CTNAG 2 cut(s) 28, 178
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 162
LpnPI CCDG 4 cut(s) 136, 231, 291, 354
MaeI CTAG 2 cut(s) 273, 336
MaeII ACGT 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 393
MnlI CCTC 1 cut(s) 51
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 3 cut(s) 187, 232, 295
MwoI GCNNNNNNNGC 2 cut(s) 245, 308
NlaIII CATG 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 215
RsaI GTAC 3 cut(s) 9, 271, 288
RsaNI GTAC 3 cut(s) 8, 270, 287
RseI CAYNNNNRTG 3 cut(s) 187, 232, 295
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 51
SetI ASST 5 cut(s) 13, 51, 352, 377, 383
SfcI CTRYAG 1 cut(s) 145
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 3 cut(s) 187, 232, 295
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 1 cut(s) 393
SspI AATATT 1 cut(s) 112
SspMI CTAG 2 cut(s) 273, 336
SstI GAGCTC 1 cut(s) 51
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 7, 61
TaiI ACGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 15, 131
TasI AATT 1 cut(s) 393
TatI WGTACW 1 cut(s) 269
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TspDTI ATGAA 5 cut(s) 38, 93, 99, 104, 149
VpaK11BI GGWCC 1 cut(s) 215
XspI CTAG 2 cut(s) 273, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.