Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Forward (+)

12316 .. 14381

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000929.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgcttaggcattttgacaaggttaaacctttaagcacccctatgatagtccgtagtcttgatcctaaaaaggatcctctccgtctgaaggatgatgatgaagatgtgctagaggcagaagtgccttacttgagtacaataggcgcattattttacttagctcaatgcacaggaccagacatctcgtttgtagtgaacttaaaagccgccgacgctggcctgcgttctctgtccccatcccaaaacaatataagtgttttggaaggttttgctgatgctgggtacctctctgacccacacaaaggtctctcccaaactggtttagtgttcaccatgggaaaagaccgtgatatcttggaggtctacagaacagaccgtagtcgctatatcttcgaaccatgcagagattattgctcttcacgaagtggtcctataccatatgagattggttatcttccaaatttagagtggttggcgctcggtcaaaataatctaaatggccatatcccatcctcaatcttcaatatctccacaataacatcattagatctcggcctcaatcagctttcaggtagcttcccaacagacataggccttgcgcgcgcttccaaaactagaagtgttttatgcagcaaggaatcacctcagtggagtaatccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.29

Weight (kDa)

5.4

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	2 cut(s)	601, 603
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	3 cut(s)	56, 68, 81
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	136, 284
AfiI	CCNNNNNNNGG	2 cut(s)	88, 302
AgsI	TTSAA	1 cut(s)	523
AleI	CACNNNNGTG	1 cut(s)	646
AluBI	AGCT	3 cut(s)	161, 565, 576
AluI	AGCT	3 cut(s)	161, 565, 576
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	3 cut(s)	56, 68, 81
AoxI	GGCC	4 cut(s)	217, 499, 553, 592
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	1 cut(s)	460
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
Asp718I	GGTACC	1 cut(s)	282
AspLEI	GCGC	5 cut(s)	146, 478, 601, 603, 605
AspS9I	GGNCC	2 cut(s)	173, 428
AsuHPI	GGTGA	2 cut(s)	322, 633
AsuII	TTCGAA	1 cut(s)	393
AvaII	GGWCC	2 cut(s)	173, 428
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	642
BccI	CCATC	2 cut(s)	244, 517
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	110, 615
BfmI	CTRYAG	1 cut(s)	364
BfoI	RGCGCY	1 cut(s)	479
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	2 cut(s)	207, 631
BlsI	GCNGC	2 cut(s)	208, 632
Bme18I	GGWCC	2 cut(s)	173, 428
BmgT120I	GGNCC	2 cut(s)	173, 428
BmiI	GGNNCC	2 cut(s)	75, 284
BmsI	GCATC	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 302
Bse1I	ACTGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	3 cut(s)	97, 236, 509
BseLI	CCNNNNNNNGG	2 cut(s)	88, 302
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	322
BsePI	GCGCGC	2 cut(s)	599, 601
BseXI	GCAGC	1 cut(s)	642
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	2 cut(s)	601, 603
BshFI	GGCC	4 cut(s)	219, 501, 555, 594
BshNI	GGYRCC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	88, 302
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	4 cut(s)	219, 501, 555, 594
Bso31I	GGTCTC	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	61, 73, 547
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	4 cut(s)	219, 501, 555, 594
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	2 cut(s)	601, 603
BspLI	GGNNCC	2 cut(s)	75, 284
BspPI	GGATC	3 cut(s)	56, 68, 81
BspQI	GCTCTTC	1 cut(s)	421
BspT104I	TTCGAA	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	333
BssHII	GCGCGC	2 cut(s)	599, 601
BssMI	GATC	3 cut(s)	61, 73, 547
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	347, 377
Bst6I	CTCTTC	1 cut(s)	421
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	217, 221, 601, 603
BstDEI	CTNAG	3 cut(s)	5, 157, 645
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	3 cut(s)	97, 236, 509
BstFNI	CGCG	2 cut(s)	601, 603
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	5 cut(s)	146, 478, 601, 603, 605
BstKTI	GATC	3 cut(s)	64, 76, 550
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	61, 73, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 600
BstPAI	GACNNNNGTC	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	2 cut(s)	601, 603
BstV1I	GCAGC	1 cut(s)	642
BstX2I	RGATCY	2 cut(s)	73, 547
BstYI	RGATCY	2 cut(s)	73, 547
BsuRI	GGCC	4 cut(s)	219, 501, 555, 594
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	97, 236, 509
BtsIMutI	CAGTG	1 cut(s)	653
Cac8I	GCNNGC	4 cut(s)	217, 221, 601, 603
CfoI	GCGC	5 cut(s)	146, 478, 601, 603, 605
Cfr13I	GGNCC	2 cut(s)	173, 428
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	135, 283
CviAII	CATG	2 cut(s)	334, 399
CviJI	RGCY	8 cut(s)	161, 206, 219, 501, 555, 565, 576, 594
CviKI_1	RGCY	8 cut(s)	161, 206, 219, 501, 555, 565, 576, 594
CviQI	GTAC	2 cut(s)	135, 283
DdeI	CTNAG	3 cut(s)	5, 157, 645
DpnI	GATC	3 cut(s)	63, 75, 549
DpnII	GATC	3 cut(s)	61, 73, 547
DraIII	CACNNNGTG	1 cut(s)	425
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	173, 428
Eco57I	CTGAAG	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	337, 402
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	333, 398
FauNDI	CATATG	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	207, 631
FokI	GGATG	3 cut(s)	104, 223, 496
Fsp4HI	GCNGC	2 cut(s)	207, 631
FspBI	CTAG	2 cut(s)	110, 615
GlaI	GCGC	5 cut(s)	145, 477, 600, 602, 604
GluI	GCNGC	2 cut(s)	207, 631
GsaI	CCCAGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	4 cut(s)	219, 501, 555, 594
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	5 cut(s)	146, 478, 601, 603, 605
Hin1II	CATG	2 cut(s)	337, 402
Hin6I	GCGC	5 cut(s)	144, 476, 599, 601, 603
HinP1I	GCGC	5 cut(s)	144, 476, 599, 601, 603
HinfI	GANTC	1 cut(s)	638
HphI	GGTGA	2 cut(s)	322, 633
Hpy166II	GTNNAC	3 cut(s)	196, 330, 364
Hpy188I	TCNGA	2 cut(s)	87, 292
Hpy188III	TCNNGA	2 cut(s)	59, 420
Hpy8I	GTNNAC	3 cut(s)	196, 330, 364
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	82, 257
HpyCH4III	ACNGT	2 cut(s)	347, 377
HpyCH4V	TGCA	3 cut(s)	168, 402, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 600
HpyF3I	CTNAG	3 cut(s)	5, 157, 645
Hsp92II	CATG	2 cut(s)	337, 402
HspAI	GCGC	5 cut(s)	144, 476, 599, 601, 603
KpnI	GGTACC	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	61, 73, 547
LguI	GCTCTTC	1 cut(s)	421
LpnPI	CCDG	7 cut(s)	156, 189, 201, 233, 264, 303, 555
Lsp1109I	GCAGC	1 cut(s)	642
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	110, 615
MalI	GATC	3 cut(s)	63, 75, 549
MboI	GATC	3 cut(s)	61, 73, 547
MboII	GAAGA	5 cut(s)	113, 382, 408, 446, 511
MflI	RGATCY	2 cut(s)	73, 547
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	1 cut(s)	460
MluNI	TGGCCA	1 cut(s)	501
MnlI	CCTC	7 cut(s)	87, 106, 296, 352, 523, 566, 654
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	3 cut(s)	24, 32, 200
MslI	CAYNNNNRTG	2 cut(s)	41, 646
Msp20I	TGGCCA	1 cut(s)	501
MvnI	CGCG	2 cut(s)	601, 603
MwoI	GCNNNNNNNGC	2 cut(s)	212, 600
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	3 cut(s)	61, 73, 547
NlaIII	CATG	2 cut(s)	337, 402
NlaIV	GGNNCC	2 cut(s)	75, 284
NmeAIII	GCCGAG	1 cut(s)	531
NspV	TTCGAA	1 cut(s)	393
OliI	CACNNNNGTG	1 cut(s)	646
PauI	GCGCGC	2 cut(s)	599, 601
PceI	AGGCCT	1 cut(s)	594
PciSI	GCTCTTC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	638
PkrI	GCNGC	2 cut(s)	208, 632
PshAI	GACNNNNGTC	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	75, 284
PspPI	GGNCC	2 cut(s)	173, 428
PsuI	RGATCY	2 cut(s)	73, 547
PteI	GCGCGC	2 cut(s)	599, 601
RsaI	GTAC	2 cut(s)	136, 284
RsaNI	GTAC	2 cut(s)	135, 283
RseI	CAYNNNNRTG	2 cut(s)	41, 646
SapI	GCTCTTC	1 cut(s)	421
SaqAI	TTAA	3 cut(s)	24, 32, 200
SatI	GCNGC	2 cut(s)	207, 631
Sau3AI	GATC	3 cut(s)	61, 73, 547
Sau96I	GGNCC	2 cut(s)	173, 428
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	393
SinI	GGWCC	2 cut(s)	173, 428
SmiMI	CAYNNNNRTG	2 cut(s)	41, 646
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	1 cut(s)	460
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	2 cut(s)	110, 615
StuI	AGGCCT	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	347, 377
TaqI	TCGA	1 cut(s)	393
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	1 cut(s)	460
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	3 cut(s)	24, 32, 200
Tru9I	TTAA	3 cut(s)	24, 32, 200
TscAI	CASTG	1 cut(s)	653
TseI	GCWGC	1 cut(s)	630
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	2 cut(s)	41, 71
TspRI	CASTG	1 cut(s)	653
VpaK11BI	GGWCC	2 cut(s)	173, 428
XapI	RAATTY	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	110, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.