Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003002.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Reverse (-)

216835 .. 217600

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003002.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgggactgatatgcttcaattctcagattctgatgcttcagcgaggctgtattggcgcggttggaggtgatctgggggtgagcaggggctcaggcggtagcctgcttagcagtgtttccgtaggtcacagcgttggtcgaagtttggatgcaaagaaagatccatttcatccaaaggaagatgatgaagaggtgttgggagctgaaattccctatctaagtgcaatatgcccattattgtacttagcccaatgcacaagaccagacattgcattctcagtgaacttagagacaagaggggccgcagatggaactgcaatccctaaagaaaatgttgatggcgaaagcaccactcactacactgaaaccccaaataatattgttttggttggttttgttgatgctgggtacctctctgacccacataaaggtcattcccaaactggttatgtatttaccattggcaaacggcgatatgttggagatcaaccaagcaaaaccttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

17.81

Weight (kDa)

5.45

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	408
AccII	CGCG	1 cut(s)	59
AciI	CCGC	3 cut(s)	59, 96, 303
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	23
AfaI	GTAC	2 cut(s)	242, 410
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	207
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	80, 91
BanI	GGYRCC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	92
BccI	CCATC	2 cut(s)	302, 332
BceAI	ACGGC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	303
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	2 cut(s)	301, 410
BmsI	GCATC	3 cut(s)	24, 139, 391
Bpu10I	CCTNAGC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	448
Bse3DI	GCAATG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	154, 169
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	38, 105, 291
BseNI	ACTGG	1 cut(s)	448
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	70, 160, 484
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	3 cut(s)	59, 96, 303
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	3 cut(s)	37, 104, 290
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	301, 410
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	448
BssMI	GATC	3 cut(s)	70, 160, 484
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	7 cut(s)	24, 91, 107, 218, 244, 277, 286
BstF5I	GGATG	2 cut(s)	154, 169
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	73, 163, 487
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	3 cut(s)	70, 160, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 108
BstUI	CGCG	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	154, 169
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	3 cut(s)	118, 285, 360
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	241, 409
CviJI	RGCY	6 cut(s)	48, 90, 102, 203, 248, 302
CviKI_1	RGCY	6 cut(s)	48, 90, 102, 203, 248, 302
CviQI	GTAC	2 cut(s)	241, 409
DdeI	CTNAG	7 cut(s)	24, 91, 107, 218, 244, 277, 286
DpnI	GATC	3 cut(s)	72, 162, 486
DpnII	GATC	3 cut(s)	70, 160, 484
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	92
FaiI	YATR	5 cut(s)	13, 229, 426, 450, 477
FaqI	GGGAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	2 cut(s)	156, 161
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	303
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	28
HphI	GGTGA	2 cut(s)	80, 91
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	27, 33, 418
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	152, 224, 255, 272, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 108
HpyF3I	CTNAG	7 cut(s)	24, 91, 107, 218, 244, 277, 286
HspAI	GCGC	1 cut(s)	57
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	70, 160, 484
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	59, 70, 78, 116, 276, 390, 429
LweI	GCATC	3 cut(s)	24, 139, 391
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	3 cut(s)	72, 162, 486
MboI	GATC	3 cut(s)	70, 160, 484
MboII	GAAGA	2 cut(s)	191, 200
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	2 cut(s)	19, 207
MmeI	TCCRAC	2 cut(s)	43, 460
MnlI	CCTC	5 cut(s)	38, 59, 184, 290, 422
Mva1269I	GAATGC	1 cut(s)	272
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	54, 108
NdeII	GATC	3 cut(s)	70, 160, 484
NlaIV	GGNNCC	2 cut(s)	301, 410
NmuCI	GTSAC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	301, 410
PspPI	GGNCC	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	2 cut(s)	242, 410
RsaNI	GTAC	2 cut(s)	241, 409
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	70, 160, 484
Sau96I	GGNCC	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	70, 127, 195, 205, 414, 433, 503
SfaNI	GCATC	3 cut(s)	24, 139, 391
Sse9I	AATT	2 cut(s)	19, 207
SsiI	CCGC	3 cut(s)	59, 96, 303
SspI	AATATT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	139
TasI	AATT	2 cut(s)	19, 207
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	3 cut(s)	118, 285, 367
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	158, 201
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	3 cut(s)	118, 285, 367
XapI	RAATTY	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.