Rmu_sc0005645.1_g000014

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005645.1
OG0003281
Physical Location & Seq
Reverse (-)
61596 .. 69756
8161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005645.1_g000014.1.cds

Sequence Viewer

Length: 1512 bp
atggatgcaaccaacgacatagatctcggtcgtgatccccaaggacgattgttggagtctcaaatccaacgtagttgcccattcgtctgtacggacccatcacagagcgctgtggcagcgcaattggcacataaagtcaggcgatataacatggacaaagcacatcctgctagcactcccatgattggtcgaagtttggatgcaaggaaagatccatttcgtccaaaggaagatgacgaacaagtgttgggagctgaaattccctatctaagtgcaataggcgcattattgtacttagcccaatttactcgaccagacattgcattctcagtgaacttagagacaagagggaccgcagatggaactgcaatccctaaaggaaatgttgatggcgaaaatgccactcactacactaaaacgccaaatgacgttttggtaggttttgctgatgctggatacgtatctgacccacatatcgttcccaaactgctgaacgaggcttctacctccattgctctcagttccacggcgcctttgggttctcacctggctgtttctctttcaaaccgaaacacatggaagaaaaagaccttccatccagcgttcgggttgaatcagaacaccgggcgttggatttgtataggtgatttcgttccttcaaatcacggagaggtatcacctttcaatgacaaaggacaagactcaagtcagtgtcatcttcaggatgttgaggttgctacaagcatttgggttggcttacatctaccagaaaaggtattagctccatttgggaatcagtacttggaatatgcacttcctgatgaaagtgctcacatcgaaaagcatctgtgtgtgacgatatttgacatcaatgtgaggacattatggtgtaactatgtaattacccaagtagcaccgatacgggtacgagtatctggatacgatacggtgcgatacgtggaaacggcaaatcttaaatgtaataggatacggagtccatatcataaaaccatcactccatcagatgcacaacgacacaaaccatcagactatcagagtgatgaaagtgaatcaaacccacaaaccatcacaacttcacaagccataaccatatcacaaaccatcagagtgatcagacgcacaaaccatcacaagccatctcgaatgaattcaatcaagaagaagcgaaagaagaaactccagctggtttccttttggcagacgtctgtaggatacgttttgattgcatctcgaagagaaaacgcgaagaaatacgaccgtatccgtggcgtatcaaaattaggatccgttggatatgcgtatccgggccgtatcgcacccgtatcccgtatcggtatgggatacgaaggcaaaatgccgtatccatgcatcctaggtaattactatggtgacaagatgtccactttcagttatttggagcaggtgctgcctgctattttagatgctactgaggttcgcgagtctgtgcatagccttcagcattctctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

503

Amino Acids

55.98

Weight (kDa)

8.97

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1432
AatII GACGTC 1 cut(s) 1226
Acc36I ACCTGC 1 cut(s) 1432
AccB1I GGYRCC 1 cut(s) 529
AccII CGCG 2 cut(s) 1265, 1479
AciI CCGC 1 cut(s) 354
AclWI GGATC 4 cut(s) 29, 206, 1299, 1312
AcsI RAATTY 2 cut(s) 258, 1168
AcuI CTGAAG 2 cut(s) 704, 1481
AcyI GRCGYC 2 cut(s) 530, 1223
AfaI GTAC 4 cut(s) 91, 293, 800, 927
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 3 cut(s) 185, 605, 630
AgsI TTSAA 5 cut(s) 564, 613, 660, 685, 1173
AhdI GACNNNNNGTC 1 cut(s) 1417
AjnI CCWGG 1 cut(s) 546
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AluBI AGCT 3 cut(s) 254, 782, 1204
AluI AGCT 3 cut(s) 254, 782, 1204
Alw21I GWGCWC 1 cut(s) 832
Alw26I GTCTC 2 cut(s) 63, 335
AlwI GGATC 4 cut(s) 29, 206, 1299, 1312
AlwNI CAGNNNCTG 1 cut(s) 1447
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 1 cut(s) 1327
ApeKI GCWGC 2 cut(s) 116, 1447
ApoI RAATTY 2 cut(s) 258, 1168
Asp700I GAANNNNTTC 1 cut(s) 1168
AspA2I CCTAGG 1 cut(s) 1393
AspLEI GCGC 4 cut(s) 110, 121, 284, 532
AspS9I GGNCC 3 cut(s) 94, 351, 1327
AsuC2I CCSGG 2 cut(s) 625, 1326
AsuHPI GGTGA 4 cut(s) 536, 656, 669, 1421
AsuNHI GCTAGC 1 cut(s) 170
AvaII GGWCC 2 cut(s) 94, 351
AvrII CCTAGG 1 cut(s) 1393
BaeI ACNNNNGTAYC 2 cut(s) 1264, 1297
BamHI GGATCC 1 cut(s) 1304
BanI GGYRCC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 832
BbvI GCAGC 2 cut(s) 128, 1434
BceAI ACGGC 4 cut(s) 543, 981, 1314, 1363
BciT130I CCWGG 1 cut(s) 548
BciVI GTATCC 9 cut(s) 449, 932, 981, 1226, 1292, 1332, 1354, 1355, 1392
BclI TGATCA 1 cut(s) 1131
BcnI CCSGG 2 cut(s) 625, 1326
BcoDI GTCTC 2 cut(s) 63, 335
BfaI CTAG 2 cut(s) 171, 1394
BfmI CTRYAG 1 cut(s) 1227
BfoI RGCGCY 2 cut(s) 111, 533
BfuAI ACCTGC 1 cut(s) 1432
BfuI GTATCC 9 cut(s) 449, 932, 981, 1226, 1292, 1332, 1354, 1355, 1392
BglII AGATCT 1 cut(s) 22
BisI GCNGC 2 cut(s) 117, 1448
BlnI CCTAGG 1 cut(s) 1393
BlsI GCNGC 2 cut(s) 118, 1449
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 3 cut(s) 548, 625, 1326
Bme18I GGWCC 2 cut(s) 94, 351
BmeRI GACNNNNNGTC 1 cut(s) 1417
BmgT120I GGNCC 3 cut(s) 94, 351, 1327
BmiI GGNNCC 4 cut(s) 96, 352, 531, 1306
BmrFI CCNGG 3 cut(s) 548, 625, 1326
BmsI GCATC 7 cut(s) 190, 439, 853, 1015, 1256, 1398, 1453
BmtI GCTAGC 1 cut(s) 174
BoxI GACNNNNGTC 1 cut(s) 705
BpmI CTGGAG 1 cut(s) 1184
BpuEI CTTGAG 1 cut(s) 688
BpuMI CCSGG 2 cut(s) 625, 1326
BsaAI YACGTR 2 cut(s) 460, 958
BsaBI GATNNNNATC 1 cut(s) 460
BsaHI GRCGYC 2 cut(s) 530, 1223
BsaJI CCNNGG 4 cut(s) 40, 525, 1285, 1393
BsaXI ACNNNNNCTCC 2 cut(s) 1000, 1030
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 605, 630
Bse3DI GCAATG 2 cut(s) 318, 510
Bse8I GATNNNNATC 1 cut(s) 460
BseBI CCWGG 1 cut(s) 548
BseDI CCNNGG 4 cut(s) 40, 525, 1285, 1393
BseGI GGATG 6 cut(s) 10, 163, 205, 595, 730, 1389
BseJI GATNNNNATC 1 cut(s) 460
BseLI CCNNNNNNNGG 3 cut(s) 185, 605, 630
BseMI GCAATG 2 cut(s) 318, 510
BseMII CTCAG 3 cut(s) 342, 532, 1461
BseXI GCAGC 2 cut(s) 128, 1434
Bsh1236I CGCG 2 cut(s) 1265, 1479
Bsh1285I CGRYCG 2 cut(s) 31, 1279
BshFI GGCC 1 cut(s) 1329
BshNI GGYRCC 1 cut(s) 529
BsiEI CGRYCG 2 cut(s) 31, 1279
BsiHKAI GWGCWC 1 cut(s) 832
BsiSI CCGG 2 cut(s) 624, 1325
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 3 cut(s) 185, 605, 630
BsmAI GTCTC 2 cut(s) 63, 335
BsmFI GGGAC 1 cut(s) 364
BsmI GAATGC 2 cut(s) 323, 1501
BsnI GGCC 1 cut(s) 1329
Bsp1286I GDGCHC 1 cut(s) 832
Bsp143I GATC 5 cut(s) 22, 34, 211, 1131, 1304
Bsp68I TCGCGA 1 cut(s) 1479
BspACI CCGC 1 cut(s) 354
BspANI GGCC 1 cut(s) 1329
BspCNI CTCAG 3 cut(s) 341, 531, 1462
BspFNI CGCG 2 cut(s) 1265, 1479
BspLI GGNNCC 4 cut(s) 96, 352, 531, 1306
BspMI ACCTGC 1 cut(s) 1432
BspOI GCTAGC 1 cut(s) 174
BspPI GGATC 4 cut(s) 29, 206, 1299, 1312
BspT107I GGYRCC 1 cut(s) 529
BsrDI GCAATG 2 cut(s) 318, 510
BssECI CCNNGG 4 cut(s) 40, 525, 1285, 1393
BssMI GATC 5 cut(s) 22, 34, 211, 1131, 1304
BssNI GRCGYC 2 cut(s) 530, 1223
BssT1I CCWWGG 2 cut(s) 40, 1393
Bst2UI CCWGG 1 cut(s) 548
Bst4CI ACNGT 2 cut(s) 949, 1280
Bst6I CTCTTC 1 cut(s) 1249
BstACI GRCGYC 2 cut(s) 530, 1223
BstAPI GCANNNNNTGC 2 cut(s) 167, 1447
BstBAI YACGTR 2 cut(s) 460, 958
BstC8I GCNNGC 2 cut(s) 172, 1452
BstDEI CTNAG 6 cut(s) 269, 295, 328, 337, 518, 1470
BstDSI CCRYGG 2 cut(s) 525, 1285
BstF5I GGATG 6 cut(s) 10, 163, 205, 595, 730, 1389
BstFNI CGCG 2 cut(s) 1265, 1479
BstH2I RGCGCY 2 cut(s) 111, 533
BstHHI GCGC 4 cut(s) 110, 121, 284, 532
BstKTI GATC 5 cut(s) 25, 37, 214, 1134, 1307
BstMAI GTCTC 2 cut(s) 63, 335
BstMBI GATC 5 cut(s) 22, 34, 211, 1131, 1304
BstMCI CGRYCG 2 cut(s) 31, 1279
BstMWI GCNNNNNNNGC 5 cut(s) 116, 125, 167, 281, 1447
BstNI CCWGG 1 cut(s) 548
BstPAI GACNNNNGTC 1 cut(s) 705
BstSCI CCNGG 3 cut(s) 546, 623, 1324
BstSFI CTRYAG 1 cut(s) 1227
BstSNI TACGTA 1 cut(s) 460
BstUI CGCG 2 cut(s) 1265, 1479
BstV1I GCAGC 2 cut(s) 128, 1434
BstX2I RGATCY 3 cut(s) 22, 211, 1304
BstYI RGATCY 3 cut(s) 22, 211, 1304
BsuI GTATCC 9 cut(s) 449, 932, 981, 1226, 1292, 1332, 1354, 1355, 1392
BsuRI GGCC 1 cut(s) 1329
BtgI CCRYGG 2 cut(s) 525, 1285
BtsCI GGATG 6 cut(s) 10, 163, 205, 595, 730, 1389
BtsIMutI CAGTG 2 cut(s) 336, 716
BtuMI TCGCGA 1 cut(s) 1479
BveI ACCTGC 1 cut(s) 1432
Cac8I GCNNGC 2 cut(s) 172, 1452
CaiI CAGNNNCTG 1 cut(s) 1447
CfoI GCGC 4 cut(s) 110, 121, 284, 532
Cfr13I GGNCC 3 cut(s) 94, 351, 1327
CseI GACGC 1 cut(s) 1146
Csp6I GTAC 4 cut(s) 90, 292, 799, 926
CviAII CATG 4 cut(s) 151, 181, 576, 1386
CviQI GTAC 4 cut(s) 90, 292, 799, 926
DdeI CTNAG 6 cut(s) 269, 295, 328, 337, 518, 1470
DinI GGCGCC 1 cut(s) 531
DpnI GATC 5 cut(s) 24, 36, 213, 1133, 1306
DpnII GATC 5 cut(s) 22, 34, 211, 1131, 1304
DriI GACNNNNNGTC 1 cut(s) 1417
Eam1104I CTCTTC 1 cut(s) 1249
Eam1105I GACNNNNNGTC 1 cut(s) 1417
EarI CTCTTC 1 cut(s) 1249
Eco105I TACGTA 1 cut(s) 460
Eco130I CCWWGG 2 cut(s) 40, 1393
Eco47I GGWCC 2 cut(s) 94, 351
Eco47III AGCGCT 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 704, 1481
EcoRI GAATTC 1 cut(s) 1168
EcoRII CCWGG 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 40, 1393
EcoT22I ATGCAT 1 cut(s) 1391
EgeI GGCGCC 1 cut(s) 531
EheI GGCGCC 1 cut(s) 531
ErhI CCWWGG 2 cut(s) 40, 1393
FaeI CATG 4 cut(s) 154, 184, 579, 1389
FaqI GGGAC 1 cut(s) 364
FatI CATG 4 cut(s) 150, 180, 575, 1385
FbaI TGATCA 1 cut(s) 1131
Fnu4HI GCNGC 2 cut(s) 117, 1448
FokI GGATG 6 cut(s) 17, 150, 212, 582, 737, 1376
Fsp4HI GCNGC 2 cut(s) 117, 1448
FspBI CTAG 2 cut(s) 171, 1394
GlaI GCGC 4 cut(s) 109, 120, 283, 531
GluI GCNGC 2 cut(s) 117, 1448
GsuI CTGGAG 1 cut(s) 1184
HaeII RGCGCY 2 cut(s) 111, 533
HaeIII GGCC 1 cut(s) 1329
HapII CCGG 2 cut(s) 624, 1325
HgaI GACGC 1 cut(s) 1146
HhaI GCGC 4 cut(s) 110, 121, 284, 532
Hin1I GRCGYC 2 cut(s) 530, 1223
Hin1II CATG 4 cut(s) 154, 184, 579, 1389
Hin6I GCGC 4 cut(s) 108, 119, 282, 530
HinP1I GCGC 4 cut(s) 108, 119, 282, 530
HinfI GANTC 7 cut(s) 56, 613, 701, 793, 994, 1070, 1481
HpaII CCGG 2 cut(s) 624, 1325
HphI GGTGA 4 cut(s) 536, 656, 669, 1421
Hpy166II GTNNAC 2 cut(s) 334, 1422
Hpy188I TCNGA 7 cut(s) 466, 618, 1024, 1048, 1056, 1127, 1136
Hpy188III TCNNGA 8 cut(s) 32, 722, 818, 936, 1161, 1177, 1251, 1478
Hpy8I GTNNAC 2 cut(s) 334, 1422
HpyAV CCTTC 4 cut(s) 601, 666, 1361, 1505
HpyCH4III ACNGT 2 cut(s) 949, 1280
HpyCH4IV ACGT 6 cut(s) 70, 429, 459, 957, 1223, 1236
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 125, 167, 281, 1447
HpyF3I CTNAG 6 cut(s) 269, 295, 328, 337, 518, 1470
HpySE526I ACGT 6 cut(s) 70, 429, 459, 957, 1223, 1236
Hsp92I GRCGYC 2 cut(s) 530, 1223
Hsp92II CATG 4 cut(s) 154, 184, 579, 1389
HspAI GCGC 4 cut(s) 108, 119, 282, 530
KasI GGCGCC 1 cut(s) 529
Ksp22I TGATCA 1 cut(s) 1131
Kzo9I GATC 5 cut(s) 22, 34, 211, 1131, 1304
LmnI GCTCC 3 cut(s) 251, 787, 1438
Lsp1109I GCAGC 2 cut(s) 128, 1434
LweI GCATC 7 cut(s) 190, 439, 853, 1015, 1256, 1398, 1453
MaeI CTAG 2 cut(s) 171, 1394
MaeII ACGT 6 cut(s) 70, 429, 459, 957, 1223, 1236
MaeIII GTNAC 3 cut(s) 853, 890, 1409
MalI GATC 5 cut(s) 24, 36, 213, 1133, 1306
MboI GATC 5 cut(s) 22, 34, 211, 1131, 1304
MboII GAAGA 7 cut(s) 242, 592, 710, 1192, 1204, 1266, 1279
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 3 cut(s) 22, 211, 1304
MhlI GDGCHC 1 cut(s) 832
MluCI AATT 7 cut(s) 122, 258, 302, 900, 1168, 1298, 1399
Mly113I GGCGCC 1 cut(s) 530
MlyI GAGTC 4 cut(s) 65, 695, 1003, 1490
MmeI TCCRAC 4 cut(s) 33, 91, 611, 1291
MnlI CCTC 7 cut(s) 341, 490, 517, 664, 724, 870, 1465
Mph1103I ATGCAT 1 cut(s) 1391
MroXI GAANNNNTTC 1 cut(s) 1168
MseI TTAA 1 cut(s) 975
MslI CAYNNNNRTG 5 cut(s) 179, 849, 872, 886, 1127
MspA1I CMGCKG 1 cut(s) 1204
MspI CCGG 2 cut(s) 624, 1325
MspR9I CCNGG 3 cut(s) 548, 625, 1326
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 2 cut(s) 323, 1501
MvaI CCWGG 1 cut(s) 548
MvnI CGCG 2 cut(s) 1265, 1479
MwoI GCNNNNNNNGC 5 cut(s) 116, 125, 167, 281, 1447
NarI GGCGCC 1 cut(s) 530
NciI CCSGG 2 cut(s) 625, 1326
NdeII GATC 5 cut(s) 22, 34, 211, 1131, 1304
NheI GCTAGC 1 cut(s) 170
NlaIII CATG 4 cut(s) 154, 184, 579, 1389
NlaIV GGNNCC 4 cut(s) 96, 352, 531, 1306
NmuCI GTSAC 2 cut(s) 853, 1409
NruI TCGCGA 1 cut(s) 1479
NsiI ATGCAT 1 cut(s) 1391
PaqCI CACCTGC 1 cut(s) 1432
PctI GAATGC 2 cut(s) 323, 1501
PdmI GAANNNNTTC 1 cut(s) 1168
PfeI GAWTC 3 cut(s) 613, 793, 1070
PkrI GCNGC 2 cut(s) 118, 1449
PleI GAGTC 4 cut(s) 64, 695, 1002, 1489
PluTI GGCGCC 1 cut(s) 533
PpsI GAGTC 4 cut(s) 64, 695, 1002, 1489
Ppu21I YACGTR 2 cut(s) 460, 958
PshAI GACNNNNGTC 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 546
PspGI CCWGG 1 cut(s) 546
PspN4I GGNNCC 4 cut(s) 96, 352, 531, 1306
PspPI GGNCC 3 cut(s) 94, 351, 1327
PstNI CAGNNNCTG 1 cut(s) 1447
PsuI RGATCY 3 cut(s) 22, 211, 1304
PvuII CAGCTG 1 cut(s) 1204
RruI TCGCGA 1 cut(s) 1479
RsaI GTAC 4 cut(s) 91, 293, 800, 927
RsaNI GTAC 4 cut(s) 90, 292, 799, 926
RseI CAYNNNNRTG 5 cut(s) 179, 849, 872, 886, 1127
SaqAI TTAA 1 cut(s) 975
SatI GCNGC 2 cut(s) 117, 1448
Sau3AI GATC 5 cut(s) 22, 34, 211, 1131, 1304
Sau96I GGNCC 3 cut(s) 94, 351, 1327
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 4 cut(s) 65, 695, 1003, 1490
ScrFI CCNGG 3 cut(s) 548, 625, 1326
SduI GDGCHC 1 cut(s) 832
SfaNI GCATC 7 cut(s) 190, 439, 853, 1015, 1256, 1398, 1453
SfcI CTRYAG 1 cut(s) 1227
SfoI GGCGCC 1 cut(s) 531
SinI GGWCC 2 cut(s) 94, 351
SmiMI CAYNNNNRTG 5 cut(s) 179, 849, 872, 886, 1127
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SnaBI TACGTA 1 cut(s) 460
Sse9I AATT 7 cut(s) 122, 258, 302, 900, 1168, 1298, 1399
SsiI CCGC 1 cut(s) 354
SspDI GGCGCC 1 cut(s) 529
SspMI CTAG 2 cut(s) 171, 1394
StyD4I CCNGG 3 cut(s) 546, 623, 1324
StyI CCWWGG 2 cut(s) 40, 1393
TaaI ACNGT 2 cut(s) 949, 1280
TaiI ACGT 6 cut(s) 73, 432, 462, 960, 1226, 1239
TaqI TCGA 5 cut(s) 190, 310, 837, 1162, 1252
TaqII GACCGA 1 cut(s) 17
TasI AATT 7 cut(s) 122, 258, 302, 900, 1168, 1298, 1399
TatI WGTACW 2 cut(s) 291, 798
TfiI GAWTC 3 cut(s) 613, 793, 1070
Tru1I TTAA 1 cut(s) 975
Tru9I TTAA 1 cut(s) 975
TscAI CASTG 2 cut(s) 336, 716
TseFI GTSAC 2 cut(s) 853, 1409
TseI GCWGC 2 cut(s) 116, 1447
Tsp45I GTSAC 2 cut(s) 853, 1409
TspDTI ATGAA 3 cut(s) 837, 1077, 1181
TspGWI ACGGA 5 cut(s) 107, 681, 1006, 1274, 1297
TspRI CASTG 2 cut(s) 336, 716
VpaK11BI GGWCC 2 cut(s) 94, 351
XapI RAATTY 2 cut(s) 258, 1168
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmaJI CCTAGG 1 cut(s) 1393
XmnI GAANNNNTTC 1 cut(s) 1168
XspI CTAG 2 cut(s) 171, 1394
ZraI GACGTC 1 cut(s) 1224
ZrmI AGTACT 1 cut(s) 800
Zsp2I ATGCAT 1 cut(s) 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.