Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001824.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Reverse (-)

26865 .. 27821

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001824.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggtgatctctccttatggcgcaaggcttctcattaaacgccctgaaatcgactacgatgagacagattctctcgtattggatgtcattgcattccactaccctatcagtttgatgcttaggcattttgacaaagtcaaaccttcaagcacccccatgatcatccgtagtcttgatcctgaaaatgatcctattcgtctaaaggatgatgatgaagatgtgctagaggcagaagtgccttacttgagtacaataggcgcattattgtacttagctgaatgcacaagactggacatctcatttgcagtgaacttagagatgatggattcggatcaatcacacactagaaacgccgccaacactggcctgcattctctatcctcatcccaaaacgatataagtgttttggaaggttttgctgatgctgggtacctctctgacccacacaaaggtcgctcccaaactggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.35

Weight (kDa)

4.55

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AciI	CCGC	1 cut(s)	354
AclWI	GGATC	3 cut(s)	170, 182, 339
AfaI	GTAC	3 cut(s)	250, 269, 431
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	147
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	170, 182, 339
AoxI	GGCC	1 cut(s)	364
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	2 cut(s)	23, 260
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	429
BccI	CCATC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	224, 345
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	431
BmsI	GCATC	2 cut(s)	105, 412
Bpu10I	CCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	3 cut(s)	294, 367, 469
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	330
BseGI	GGATG	4 cut(s)	88, 162, 211, 383
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	3 cut(s)	294, 367, 469
BseYI	CCCAGC	1 cut(s)	425
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	56
BsmI	GAATGC	3 cut(s)	92, 284, 370
BsnI	GGCC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	6, 159, 175, 187, 331
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	3 cut(s)	170, 182, 339
BspT107I	GGYRCC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	3 cut(s)	294, 367, 469
BssMI	GATC	5 cut(s)	6, 159, 175, 187, 331
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	119, 271, 313
BstF5I	GGATG	4 cut(s)	88, 162, 211, 383
BstHHI	GCGC	2 cut(s)	23, 260
BstKTI	GATC	5 cut(s)	9, 162, 178, 190, 334
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	5 cut(s)	6, 159, 175, 187, 331
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	4 cut(s)	88, 162, 211, 383
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	312, 360
Cac8I	GCNNGC	1 cut(s)	368
CfoI	GCGC	2 cut(s)	23, 260
Csp6I	GTAC	3 cut(s)	249, 268, 430
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	3 cut(s)	28, 275, 366
CviKI_1	RGCY	3 cut(s)	28, 275, 366
CviQI	GTAC	3 cut(s)	249, 268, 430
DdeI	CTNAG	3 cut(s)	119, 271, 313
DpnI	GATC	5 cut(s)	8, 161, 177, 189, 333
DpnII	GATC	5 cut(s)	6, 159, 175, 187, 331
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	18, 158, 398
FatI	CATG	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	4 cut(s)	95, 149, 218, 370
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	224, 345
GlaI	GCGC	2 cut(s)	22, 259
GluI	GCNGC	1 cut(s)	354
GsaI	CCCAGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	366
HhaI	GCGC	2 cut(s)	23, 260
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	2 cut(s)	21, 258
HinP1I	GCGC	2 cut(s)	21, 258
HinfI	GANTC	2 cut(s)	68, 326
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	331, 439
Hpy188III	TCNNGA	2 cut(s)	173, 179
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	153, 404
HpyCH4V	TGCA	4 cut(s)	92, 282, 305, 370
HpyF3I	CTNAG	3 cut(s)	119, 271, 313
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	2 cut(s)	21, 258
KpnI	GGTACC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	6, 159, 175, 187, 331
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	7 cut(s)	57, 192, 275, 348, 380, 411, 450
LweI	GCATC	2 cut(s)	105, 412
MaeI	CTAG	2 cut(s)	224, 345
MalI	GATC	5 cut(s)	8, 161, 177, 189, 333
MboI	GATC	5 cut(s)	6, 159, 175, 187, 331
MboII	GAAGA	1 cut(s)	227
MnlI	CCTC	3 cut(s)	220, 391, 443
MseI	TTAA	2 cut(s)	36, 469
MslI	CAYNNNNRTG	1 cut(s)	155
Mva1269I	GAATGC	3 cut(s)	92, 284, 370
NdeII	GATC	5 cut(s)	6, 159, 175, 187, 331
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	431
PctI	GAATGC	3 cut(s)	92, 284, 370
PfeI	GAWTC	2 cut(s)	68, 326
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	431
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	3 cut(s)	250, 269, 431
RsaNI	GTAC	3 cut(s)	249, 268, 430
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	36, 469
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	6, 159, 175, 187, 331
SetI	ASST	5 cut(s)	145, 277, 415, 435, 454
SfaNI	GCATC	2 cut(s)	105, 412
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	2 cut(s)	224, 345
TaqI	TCGA	1 cut(s)	51
TatI	WGTACW	2 cut(s)	248, 267
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	68, 326
Tru1I	TTAA	2 cut(s)	36, 469
Tru9I	TTAA	2 cut(s)	36, 469
TscAI	CASTG	2 cut(s)	312, 367
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	312, 367
Tth111I	GACNNNGTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	224, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.