Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000821.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Reverse (-)

7170 .. 9624

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000821.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgctttggcgtttcaacactgaaaagattaagctttcaagcaccccaatggtcatccgtagtcttgatccaaagaatgatctatttcctccaaaagatgacgatgaagaagtgttagaggcaaaaatgcattacctaagtgcaataggcgcattattgtacttagcacaatgcacaaaaccagatatctcattcgctgtgaacttagagacgacggtttcggacctatcaagtgcaagggacgccacatatggtggactgcgttccctttccccatcccaaaacgatataagtgttttggaaggttttgctgatgctgggtacctctctgacccacataaagggtgcattcatgtcggagtaatagtgtctttgtatctaaggatgcagttagtcctagcagctgagtcctcgatggttgatggatatgtttttggtgggcaagttctggtttctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

153

Amino Acids

16.7

Weight (kDa)

4.78

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	161, 323
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	16, 39
AluBI	AGCT	2 cut(s)	34, 404
AluI	AGCT	2 cut(s)	34, 404
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
Asp718I	GGTACC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	3 cut(s)	283, 409, 416
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	398
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	323
BmsI	GCATC	2 cut(s)	304, 375
BsaHI	GRCGYC	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
BseGI	GGATG	3 cut(s)	54, 275, 390
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	413
BseYI	CCCAGC	1 cut(s)	317
BshNI	GGYRCC	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	67, 79
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	321
BssMI	GATC	2 cut(s)	67, 79
BssNI	GRCGYC	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	243
BstDEI	CTNAG	5 cut(s)	137, 163, 205, 380, 405
BstF5I	GGATG	3 cut(s)	54, 275, 390
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	70, 82
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	67, 79
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 242
BstV1I	GCAGC	1 cut(s)	413
BtsCI	GGATG	3 cut(s)	54, 275, 390
BtsIMutI	CAGTG	1 cut(s)	18
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	160, 322
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	2 cut(s)	34, 404
CviKI_1	RGCY	2 cut(s)	34, 404
CviQI	GTAC	2 cut(s)	160, 322
DdeI	CTNAG	5 cut(s)	137, 163, 205, 380, 405
DpnI	GATC	2 cut(s)	69, 81
DpnII	GATC	2 cut(s)	67, 79
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	1 cut(s)	356
FaiI	YATR	6 cut(s)	250, 252, 290, 339, 354, 429
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	352
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	3 cut(s)	41, 262, 397
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	321
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	202, 257
Hpy188I	TCNGA	3 cut(s)	223, 331, 359
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	202, 257
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	6 cut(s)	130, 143, 174, 236, 348, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 242
HpyF3I	CTNAG	5 cut(s)	137, 163, 205, 380, 405
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	150
KpnI	GGTACC	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	67, 79
LpnPI	CCDG	3 cut(s)	195, 303, 434
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	2 cut(s)	304, 375
MaeI	CTAG	1 cut(s)	398
MalI	GATC	2 cut(s)	69, 81
MboI	GATC	2 cut(s)	67, 79
MboII	GAAGA	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	4 cut(s)	99, 112, 335, 421
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	149, 242
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	2 cut(s)	67, 79
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	132
PctI	GAATGC	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	161, 323
RsaNI	GTAC	2 cut(s)	160, 322
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	2 cut(s)	67, 79
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	416
SetI	ASST	6 cut(s)	36, 138, 228, 307, 327, 406
SfaNI	GCATC	2 cut(s)	304, 375
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	47
SspMI	CTAG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	413
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	120, 341
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	223
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.