Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002501.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Forward (+)

62318 .. 63144

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002501.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgatcagtcaaagtttggatgcaaggaaagatccatttcgtccaaagaaagatgacgaagagatgttgggagctgaaattcgctatctaagtgcaataggcgcattattgtatttaacccaatgtactcgaccagacattgcattctcaatgaacttgttagatttagctcagggccaacgcagcgtcactggaatgagagacaagaggatcgcatatggaactgcaatccctaaagaaaatgttgatggcgaaagcgccactctctacactaaaacgccaaatgactttttggtcggttttgctgatactgggtacgtctctgacccacataaagatcgttcccaaactggttatgtatttgccaatgggaacacgacgatatatcttggagatcaaccaagcaaaccattgtggctacctcctcgaaccactcagagatcattgctgtacatgaggcggttcggtttttattgttacttggcaaggtttttagtgaggcaacaactcatgcaccatttcgtctttgacttggcacaagggggagtgttaaaggaaaaacatattgtgtgctttcgtcaaagcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

22.34

Weight (kDa)

9.11

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	2 cut(s)	26, 218
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	3 cut(s)	127, 317, 452
AluBI	AGCT	2 cut(s)	74, 170
AluI	AGCT	2 cut(s)	74, 170
Alw26I	GTCTC	2 cut(s)	195, 325
AlwI	GGATC	2 cut(s)	26, 218
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	104, 260
AspS9I	GGNCC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	195, 325
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	171
Bse1I	ACTGG	3 cut(s)	196, 316, 355
Bse3DI	GCAATG	2 cut(s)	138, 443
BseGI	GGATG	1 cut(s)	25
BseMI	GCAATG	2 cut(s)	138, 443
BseMII	CTCAG	2 cut(s)	185, 449
BseNI	ACTGG	3 cut(s)	196, 316, 355
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	195, 325
BsmBI	CGTCTC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	6 cut(s)	3, 31, 210, 337, 394, 440
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	184, 448
BspPI	GGATC	2 cut(s)	26, 218
BsrDI	GCAATG	2 cut(s)	138, 443
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	196, 316, 355
BssMI	GATC	6 cut(s)	3, 31, 210, 337, 394, 440
Bst6I	CTCTTC	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	89, 171, 435
BstF5I	GGATG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	104, 260
BstKTI	GATC	6 cut(s)	6, 34, 213, 340, 397, 443
BstMAI	GTCTC	2 cut(s)	195, 325
BstMBI	GATC	6 cut(s)	3, 31, 210, 337, 394, 440
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 183
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	189
CfoI	GCGC	2 cut(s)	104, 260
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	126, 316, 451
CviAII	CATG	2 cut(s)	454, 511
CviJI	RGCY	4 cut(s)	74, 170, 177, 418
CviKI_1	RGCY	4 cut(s)	74, 170, 177, 418
CviQI	GTAC	3 cut(s)	126, 316, 451
DdeI	CTNAG	3 cut(s)	89, 171, 435
DpnI	GATC	6 cut(s)	5, 33, 212, 339, 396, 442
DpnII	GATC	6 cut(s)	3, 31, 210, 337, 394, 440
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	2 cut(s)	457, 514
FaiI	YATR	8 cut(s)	217, 219, 333, 357, 385, 455, 512, 564
FatI	CATG	2 cut(s)	453, 510
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	184
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	184
GlaI	GCGC	2 cut(s)	103, 259
GluI	GCNGC	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	177
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	104, 260
Hin1II	CATG	2 cut(s)	457, 514
Hin6I	GCGC	2 cut(s)	102, 258
HinP1I	GCGC	2 cut(s)	102, 258
Hpy188I	TCNGA	2 cut(s)	325, 438
Hpy99I	CGWCG	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	23, 95, 143, 227, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 183
HpyF3I	CTNAG	3 cut(s)	89, 171, 435
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	457, 514
HspAI	GCGC	2 cut(s)	102, 258
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 31, 210, 337, 394, 440
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	5 cut(s)	147, 158, 177, 297, 336
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	1 cut(s)	10
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	187, 476
MalI	GATC	6 cut(s)	5, 33, 212, 339, 396, 442
MboI	GATC	6 cut(s)	3, 31, 210, 337, 394, 440
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	5 cut(s)	201, 432, 435, 450, 492
MseI	TTAA	2 cut(s)	116, 551
MslI	CAYNNNNRTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	101, 183
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	6 cut(s)	3, 31, 210, 337, 394, 440
NlaIII	CATG	2 cut(s)	457, 514
NmuCI	GTSAC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	3 cut(s)	127, 317, 452
RsaNI	GTAC	3 cut(s)	126, 316, 451
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	116, 551
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	6 cut(s)	3, 31, 210, 337, 394, 440
Sau96I	GGNCC	1 cut(s)	175
SetI	ASST	5 cut(s)	76, 172, 321, 424, 491
SfaNI	GCATC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	460
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	130, 427
TasI	AATT	1 cut(s)	78
TatI	WGTACW	2 cut(s)	125, 450
Tru1I	TTAA	2 cut(s)	116, 551
Tru9I	TTAA	2 cut(s)	116, 551
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.