Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002607.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Reverse (-)

190874 .. 198724

Gene Structure 7851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002607.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ctgtcttctcccccggcggcccttcctacccgatcccaactcaccagccgcgcgttgcaacttccaacacagcccagaccagatcgtccggcctccatctcccttgcagcacaccaggccgcgcttcacctccgcctgcacatcacacagccccttgtgctcttcaatagcacagaccggcctcaatcacacatcacacagaccggattcaatcaaccttcacacagaccggtctcacctgcaccaaattccatcacatgctccagcttagtccatcctcctacccacgcggccagcccacagtgtagatcgctgcagaatccggcagccctgcagccccgccccgccgctttcgcaacgcagatcgctgcccaatctggcagcctagcagcccgccttcaaggtgttactgacgtcagcccaccagttcccggcgtcagcccatcagccggtcgatttcccatttcccaccagttcctgtcaccactcgccccaatcgatctacccaacccatcagcaaaccagaagaaaggaaagcaggaggaggaagaagagaaagaaaaaggagaggaaagaaaagagagacaagagggagggaccgcagatggaactgcaatccctgaagaaaatattgatggcgaaagtgccactcactacaccaagactccaaatgatgttttggttggttttgctgatgctgggtatctctctgacccacataaaagtcgttcccaaactgtgttccaattagccggttatggtggtatcttctatgattcgaaaaagaattttgtgggtgctttttcagctagagtggaggctcctagtgcagttgatgttgaggttctggatgtgattgaggccatccaagtggcatgttttcgtcaccaaacacatatttggttggagacagattctacgctagtgctcacctattttcaatccctaaatctcataccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

320

Amino Acids

34.41

Weight (kDa)

6.32

Isoelectric Point (pI)

69.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
AasI	GACNNNNNNGTC	1 cut(s)	84
AatII	GACGTC	1 cut(s)	417
Acc36I	ACCTGC	1 cut(s)	247
AccII	CGCG	4 cut(s)	51, 53, 122, 290
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	247, 787
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	2 cut(s)	414, 435
AfiI	CCNNNNNNNGG	2 cut(s)	431, 449
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	4 cut(s)	166, 211, 401, 941
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	267, 809
AluI	AGCT	2 cut(s)	267, 809
Alw21I	GWGCWC	2 cut(s)	162, 930
Alw26I	GTCTC	3 cut(s)	238, 577, 902
AlwI	GGATC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	478
AoxI	GGCC	6 cut(s)	18, 90, 117, 179, 291, 861
ApeKI	GCWGC	7 cut(s)	107, 313, 326, 334, 368, 381, 389
ApoI	RAATTY	2 cut(s)	247, 787
AsiGI	ACCGGT	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	53, 124
AspS9I	GGNCC	2 cut(s)	19, 597
AsuC2I	CCSGG	2 cut(s)	14, 432
AsuHPI	GGTGA	6 cut(s)	34, 119, 228, 474, 878, 922
AsuII	TTCGAA	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	597
Bbv12I	GWGCWC	2 cut(s)	162, 930
BbvI	GCAGC	7 cut(s)	119, 300, 338, 346, 355, 393, 401
BccI	CCATC	8 cut(s)	104, 260, 282, 451, 520, 599, 629, 872
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	2 cut(s)	14, 432
BcoDI	GTCTC	3 cut(s)	238, 577, 902
BfaI	CTAG	5 cut(s)	386, 810, 825, 923, 961
BfmI	CTRYAG	2 cut(s)	314, 332
BfuAI	ACCTGC	1 cut(s)	247
Bme1390I	CCNGG	3 cut(s)	14, 116, 432
Bme18I	GGWCC	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	19, 597
BmiI	GGNNCC	2 cut(s)	598, 822
BmrFI	CCNGG	3 cut(s)	14, 116, 432
BmsI	GCATC	1 cut(s)	685
BpmI	CTGGAG	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	779
BpuMI	CCSGG	2 cut(s)	14, 432
Bsa29I	ATCGAT	1 cut(s)	498
BsaHI	GRCGYC	2 cut(s)	414, 435
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	2 cut(s)	203, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 449
Bse118I	RCCGGY	4 cut(s)	177, 229, 449, 752
Bse1I	ACTGG	2 cut(s)	425, 472
BseBI	CCWGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	274, 856, 864
BseLI	CCNNNNNNNGG	2 cut(s)	431, 449
BseNI	ACTGG	2 cut(s)	425, 472
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	7 cut(s)	119, 300, 338, 346, 355, 393, 401
BseYI	CCCAGC	1 cut(s)	698
BsgI	GTGCAG	3 cut(s)	122, 225, 849
Bsh1236I	CGCG	4 cut(s)	51, 53, 122, 290
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	6 cut(s)	20, 92, 119, 181, 293, 863
BshTI	ACCGGT	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	498
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	162, 930
BsiSI	CCGG	9 cut(s)	14, 89, 178, 204, 230, 323, 432, 450, 753
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	431, 449
BsmAI	GTCTC	3 cut(s)	238, 577, 902
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	6 cut(s)	20, 92, 119, 181, 293, 863
Bso31I	GGTCTC	1 cut(s)	238
Bsp119I	TTCGAA	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	162, 930
Bsp143I	GATC	5 cut(s)	32, 82, 308, 363, 499
BspANI	GGCC	6 cut(s)	20, 92, 119, 181, 293, 863
BspDI	ATCGAT	1 cut(s)	498
BspFNI	CGCG	4 cut(s)	51, 53, 122, 290
BspLI	GGNNCC	2 cut(s)	598, 822
BspMAI	CTGCAG	2 cut(s)	318, 336
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	779
BspTNI	GGTCTC	1 cut(s)	238
BsrFI	RCCGGY	4 cut(s)	177, 229, 449, 752
BsrI	ACTGG	2 cut(s)	425, 472
BssAI	RCCGGY	4 cut(s)	177, 229, 449, 752
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	5 cut(s)	32, 82, 308, 363, 499
BssNI	GRCGYC	2 cut(s)	414, 435
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	303, 739
Bst6I	CTCTTC	2 cut(s)	167, 546
BstACI	GRCGYC	2 cut(s)	414, 435
BstBI	TTCGAA	1 cut(s)	779
BstC8I	GCNNGC	3 cut(s)	137, 295, 394
BstDEI	CTNAG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	274, 856, 864
BstFNI	CGCG	4 cut(s)	51, 53, 122, 290
BstHHI	GCGC	2 cut(s)	53, 124
BstKTI	GATC	5 cut(s)	35, 85, 311, 366, 502
BstMAI	GTCTC	3 cut(s)	238, 577, 902
BstMBI	GATC	5 cut(s)	32, 82, 308, 363, 499
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 157, 353, 806, 827
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	2 cut(s)	261, 879
BstSCI	CCNGG	3 cut(s)	12, 114, 430
BstSFI	CTRYAG	2 cut(s)	314, 332
BstUI	CGCG	4 cut(s)	51, 53, 122, 290
BstV1I	GCAGC	7 cut(s)	119, 300, 338, 346, 355, 393, 401
BstXI	CCANNNNNNTGG	1 cut(s)	871
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	6 cut(s)	20, 92, 119, 181, 293, 863
BsuTUI	ATCGAT	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	274, 856, 864
BtsIMutI	CAGTG	1 cut(s)	308
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	137, 295, 394
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	2 cut(s)	53, 124
Cfr10I	RCCGGY	4 cut(s)	177, 229, 449, 752
Cfr13I	GGNCC	2 cut(s)	19, 597
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	1 cut(s)	424
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	2 cut(s)	258, 876
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	5 cut(s)	34, 84, 310, 365, 501
DpnII	GATC	5 cut(s)	32, 82, 308, 363, 499
DrdI	GACNNNNNNGTC	1 cut(s)	84
DseDI	GACNNNNNNGTC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	167, 546
EarI	CTCTTC	2 cut(s)	167, 546
EciI	GGCGGA	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	597
Eco57I	CTGAAG	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	261, 879
FaiI	YATR	7 cut(s)	259, 720, 759, 774, 877, 897, 956
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	2 cut(s)	257, 875
FauI	CCCGC	3 cut(s)	347, 352, 401
FokI	GGATG	3 cut(s)	261, 851, 863
FspBI	CTAG	5 cut(s)	386, 810, 825, 923, 961
GlaI	GCGC	2 cut(s)	52, 123
GsaI	CCCAGC	1 cut(s)	702
GsuI	CTGGAG	1 cut(s)	247
HaeIII	GGCC	6 cut(s)	20, 92, 119, 181, 293, 863
HapII	CCGG	9 cut(s)	14, 89, 178, 204, 230, 323, 432, 450, 753
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	2 cut(s)	53, 124
Hin1I	GRCGYC	2 cut(s)	414, 435
Hin1II	CATG	2 cut(s)	261, 879
Hin6I	GCGC	2 cut(s)	51, 122
HinP1I	GCGC	2 cut(s)	51, 122
HinfI	GANTC	5 cut(s)	207, 319, 664, 776, 914
HpaII	CCGG	9 cut(s)	14, 89, 178, 204, 230, 323, 432, 450, 753
HphI	GGTGA	6 cut(s)	34, 119, 228, 474, 878, 922
Hpy188I	TCNGA	1 cut(s)	712
Hpy188III	TCNNGA	1 cut(s)	848
HpyAV	CCTTC	3 cut(s)	32, 228, 407
HpyCH4III	ACNGT	2 cut(s)	303, 739
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	8 cut(s)	58, 107, 139, 242, 316, 334, 614, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 157, 353, 806, 827
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	414
Hsp92I	GRCGYC	2 cut(s)	414, 435
Hsp92II	CATG	2 cut(s)	261, 879
HspAI	GCGC	2 cut(s)	51, 122
Kzo9I	GATC	5 cut(s)	32, 82, 308, 363, 499
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	266, 826
Lsp1109I	GCAGC	7 cut(s)	119, 300, 338, 346, 355, 393, 401
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	5 cut(s)	386, 810, 825, 923, 961
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	3 cut(s)	406, 480, 884
MalI	GATC	5 cut(s)	34, 84, 310, 365, 501
MboI	GATC	5 cut(s)	32, 82, 308, 363, 499
MboII	GAAGA	6 cut(s)	154, 538, 560, 563, 635, 760
MhlI	GDGCHC	2 cut(s)	162, 930
MluCI	AATT	3 cut(s)	247, 746, 787
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	2 cut(s)	89, 885
MslI	CAYNNNNRTG	1 cut(s)	869
MspI	CCGG	9 cut(s)	14, 89, 178, 204, 230, 323, 432, 450, 753
MspR9I	CCNGG	3 cut(s)	14, 116, 432
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	4 cut(s)	51, 53, 122, 290
MwoI	GCNNNNNNNGC	5 cut(s)	116, 157, 353, 806, 827
NciI	CCSGG	2 cut(s)	14, 432
NdeII	GATC	5 cut(s)	32, 82, 308, 363, 499
NlaIII	CATG	2 cut(s)	261, 879
NlaIV	GGNNCC	2 cut(s)	598, 822
NmuCI	GTSAC	2 cut(s)	480, 884
NspI	RCATGY	2 cut(s)	261, 879
NspV	TTCGAA	1 cut(s)	779
PaqCI	CACCTGC	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PfeI	GAWTC	4 cut(s)	207, 319, 776, 914
PinAI	ACCGGT	1 cut(s)	229
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	598, 822
PspPI	GGNCC	2 cut(s)	19, 597
PstI	CTGCAG	2 cut(s)	318, 336
PstNI	CAGNNNCTG	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	869
SapI	GCTCTTC	1 cut(s)	167
Sau3AI	GATC	5 cut(s)	32, 82, 308, 363, 499
Sau96I	GGNCC	2 cut(s)	19, 597
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	3 cut(s)	14, 116, 432
SduI	GDGCHC	2 cut(s)	162, 930
SetI	ASST	9 cut(s)	132, 220, 241, 269, 406, 417, 811, 846, 935
SfaNI	GCATC	1 cut(s)	685
SfcI	CTRYAG	2 cut(s)	314, 332
SfuI	TTCGAA	1 cut(s)	779
SinI	GGWCC	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	869
Sse9I	AATT	3 cut(s)	247, 746, 787
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	5 cut(s)	386, 810, 825, 923, 961
StyD4I	CCNGG	3 cut(s)	12, 114, 430
TaaI	ACNGT	2 cut(s)	303, 739
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	454, 498, 779
TasI	AATT	3 cut(s)	247, 746, 787
TauI	GCSGC	5 cut(s)	20, 51, 122, 293, 350
TfiI	GAWTC	4 cut(s)	207, 319, 776, 914
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	2 cut(s)	480, 884
TseI	GCWGC	7 cut(s)	107, 313, 326, 334, 368, 381, 389
Tsp45I	GTSAC	2 cut(s)	480, 884
TspRI	CASTG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	597
XapI	RAATTY	2 cut(s)	247, 787
XceI	RCATGY	2 cut(s)	261, 879
XspI	CTAG	5 cut(s)	386, 810, 825, 923, 961
ZraI	GACGTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.