Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001231.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Forward (+)

12670 .. 15880

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001231.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgaaggattttgggagaacacgattatgtctcggtttagaacttgagcatcgtgtcgatagatgcttaggcattttgacaaggtcaagccttcaagcaccccccatgatcgtccatagtcttgatcctgaaaaggatcctcttcgtcgaaaagatgatgacgaagatgtgctagaggcagaagtgccttacttaaaaggttttgctgatgttgggtatctttctgacccacacaaaggtcattcccaatccggtcaagtgttcaccatgggaaaagactgtgacatcttggaggtctacaaaatagatcctagtggctatatctttgaacaatgcagagatcattgctcttcacgaagtggcggatataattaccgagatgccactactcagagaagttctttcaaggtggataggcctctttttgtcaattccaaccccaagtcttctgtaaagtccaaacctttgcttcctcatcgccggaatatcactggctctattggtagtggtgctactaaagctacctctaaggataatacaggagttcctggaagagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

186

Amino Acids

20.68

Weight (kDa)

8.57

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	4 cut(s)	119, 131, 144, 302
AdeI	CACNNNGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	95, 329, 406
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	4 cut(s)	119, 131, 144, 302
AoxI	GGCC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	256
BamHI	GGATCC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	438
BciT130I	CCWGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	173, 312
Bme1390I	CCNGG	1 cut(s)	549
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	3 cut(s)	53, 58, 370
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	496
BshFI	GGCC	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	252, 481
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	418
Bsp143I	GATC	5 cut(s)	108, 124, 136, 307, 340
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	4 cut(s)	119, 131, 144, 302
BspQI	GCTCTTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	5 cut(s)	108, 124, 136, 307, 340
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	3 cut(s)	147, 355, 547
BstDEI	CTNAG	3 cut(s)	67, 390, 528
BstDSI	CCRYGG	1 cut(s)	267
BstKTI	GATC	5 cut(s)	111, 127, 139, 310, 343
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	5 cut(s)	108, 124, 136, 307, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	136, 307
BstYI	RGATCY	2 cut(s)	136, 307
BsuRI	GGCC	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	461
BtsIMutI	CAGTG	1 cut(s)	489
CviAII	CATG	2 cut(s)	106, 268
CviJI	RGCY	5 cut(s)	90, 318, 418, 495, 521
CviKI_1	RGCY	5 cut(s)	90, 318, 418, 495, 521
DdeI	CTNAG	3 cut(s)	67, 390, 528
DpnI	GATC	5 cut(s)	110, 126, 138, 309, 342
DpnII	GATC	5 cut(s)	108, 124, 136, 307, 340
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	3 cut(s)	147, 355, 547
EarI	CTCTTC	3 cut(s)	147, 355, 547
EciI	GGCGGA	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	109, 271
FaiI	YATR	6 cut(s)	28, 107, 117, 269, 321, 369
FatI	CATG	2 cut(s)	105, 267
FblI	GTMKAC	1 cut(s)	297
FspBI	CTAG	2 cut(s)	173, 312
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	2 cut(s)	252, 481
Hin1II	CATG	2 cut(s)	109, 271
HinfI	GANTC	1 cut(s)	555
HpaII	CCGG	2 cut(s)	252, 481
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	264, 298
Hpy188I	TCNGA	3 cut(s)	226, 393, 560
Hpy188III	TCNNGA	3 cut(s)	122, 128, 354
Hpy8I	GTNNAC	2 cut(s)	264, 298
Hpy99I	CGWCG	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	67, 390, 528
Hsp92II	CATG	2 cut(s)	109, 271
Kzo9I	GATC	5 cut(s)	108, 124, 136, 307, 340
LguI	GCTCTTC	1 cut(s)	355
LpnPI	CCDG	6 cut(s)	141, 265, 477, 494, 525, 534
LweI	GCATC	3 cut(s)	53, 58, 370
MaeI	CTAG	2 cut(s)	173, 312
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	5 cut(s)	110, 126, 138, 309, 342
MboI	GATC	5 cut(s)	108, 124, 136, 307, 340
MboII	GAAGA	4 cut(s)	134, 176, 342, 438
MflI	RGATCY	2 cut(s)	136, 307
MluCI	AATT	2 cut(s)	370, 430
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	6 cut(s)	150, 169, 286, 429, 483, 535
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	25
MspI	CCGG	2 cut(s)	252, 481
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	518
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	5 cut(s)	108, 124, 136, 307, 340
NlaIII	CATG	2 cut(s)	109, 271
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	355
PflFI	GACNNNGTC	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	136, 307
PsyI	GACNNNGTC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	25
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	194
Sau3AI	GATC	5 cut(s)	108, 124, 136, 307, 340
ScrFI	CCNGG	1 cut(s)	549
SetI	ASST	8 cut(s)	86, 202, 241, 297, 411, 466, 523, 527
SfaNI	GCATC	3 cut(s)	53, 58, 370
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	370, 430
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	2 cut(s)	173, 312
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	57, 148
TasI	AATT	2 cut(s)	370, 430
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	496
Tth111I	GACNNNGTC	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	2 cut(s)	173, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.