Rmu_sc0015988.1_g000002

transposition, RNA-mediated

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015988.1
Physical Location & Seq
Forward (+)
2687 .. 3102
416 bp
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UTR
Exon/CDS
Intron
Rmu_sc0015988.1_g000002.1.cds

Sequence Viewer

Length: 309 bp
atgatcggtcgaagtttggatgcaaggaaagatccatttcgtccaaaggaagatgatgaagaggtgttgggagctgaaattccctatctaagtgcaataggcgcattattgtacttagcccaatgtactcgaccagacattgcattcttagtgaacttagagacaagagggatcgcagatggaattgcaatccctaaaggaaatattgatggcgaaagcgccactcactacaccgaaacgccaaatgacattttggtcggttttgctgatgttgggtacctctctgacccacataaaggtcgttcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.04

Weight (kDa)

4.61

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
Acc65I GGTACC 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 276
AclWI GGATC 2 cut(s) 26, 179
AcsI RAATTY 1 cut(s) 78
AfaI GTAC 3 cut(s) 113, 127, 278
AfiI CCNNNNNNNGG 1 cut(s) 296
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 2 cut(s) 26, 179
ApoI RAATTY 1 cut(s) 78
Asp718I GGTACC 1 cut(s) 276
AspLEI GCGC 2 cut(s) 104, 221
BanI GGYRCC 1 cut(s) 276
BccI CCATC 2 cut(s) 173, 203
BcoDI GTCTC 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 278
BmsI GCATC 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 138
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 143
Bsp143I GATC 3 cut(s) 3, 31, 171
BspLI GGNNCC 1 cut(s) 278
BspPI GGATC 2 cut(s) 26, 179
BspT107I GGYRCC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 138
BssMI GATC 3 cut(s) 3, 31, 171
Bst6I CTCTTC 1 cut(s) 54
BstDEI CTNAG 4 cut(s) 89, 115, 148, 157
BstF5I GGATG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 104, 221
BstKTI GATC 3 cut(s) 6, 34, 174
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 3 cut(s) 3, 31, 171
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BtsCI GGATG 1 cut(s) 25
CfoI GCGC 2 cut(s) 104, 221
Csp6I GTAC 3 cut(s) 112, 126, 277
CviJI RGCY 2 cut(s) 74, 119
CviKI_1 RGCY 2 cut(s) 74, 119
CviQI GTAC 3 cut(s) 112, 126, 277
DdeI CTNAG 4 cut(s) 89, 115, 148, 157
DpnI GATC 3 cut(s) 5, 33, 173
DpnII GATC 3 cut(s) 3, 31, 171
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
FaiI YATR 1 cut(s) 294
FokI GGATG 1 cut(s) 32
GlaI GCGC 2 cut(s) 103, 220
HaeII RGCGCY 1 cut(s) 222
HhaI GCGC 2 cut(s) 104, 221
Hin6I GCGC 2 cut(s) 102, 219
HinP1I GCGC 2 cut(s) 102, 219
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 286
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4V TGCA 4 cut(s) 23, 95, 143, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 4 cut(s) 89, 115, 148, 157
HspAI GCGC 2 cut(s) 102, 219
KpnI GGTACC 1 cut(s) 280
Kzo9I GATC 3 cut(s) 3, 31, 171
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 1 cut(s) 147
LweI GCATC 1 cut(s) 10
MalI GATC 3 cut(s) 5, 33, 173
MboI GATC 3 cut(s) 3, 31, 171
MboII GAAGA 2 cut(s) 62, 71
MflI RGATCY 1 cut(s) 31
MluCI AATT 2 cut(s) 78, 183
MnlI CCTC 3 cut(s) 55, 161, 290
Mva1269I GAATGC 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 3 cut(s) 3, 31, 171
NlaIV GGNNCC 1 cut(s) 278
PctI GAATGC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 278
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 3 cut(s) 113, 127, 278
RsaNI GTAC 3 cut(s) 112, 126, 277
Sau3AI GATC 3 cut(s) 3, 31, 171
SetI ASST 4 cut(s) 66, 76, 282, 301
SfaNI GCATC 1 cut(s) 10
SgeI CNNG 4 cut(s) 36, 141, 146, 177
Sse9I AATT 2 cut(s) 78, 183
SspI AATATT 1 cut(s) 205
TaqI TCGA 2 cut(s) 10, 130
TasI AATT 2 cut(s) 78, 183
TatI WGTACW 2 cut(s) 111, 125
TspDTI ATGAA 1 cut(s) 72
XapI RAATTY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.