Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007038.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Forward (+)

35230 .. 37680

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007038.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgctcaggcgatttaacatggacaaaatgcatcttgctagcactctcatgatcggtcgaagttcgaatgcaaagaaagatccatttcgtccaaaggaagatgacgaagaggtgttgggagctgaaattccctatctaagtgcaataggcacattattgtacttagcccaatgtactcgaccagacattgcattctcagtgaactttttagctagatttagctcagcgccaactttccaattccacacttttcaactccaacctctcctcgtcgctgaccctgactcgagaccctctaaatccctaaatcatccatcttcacggggagcccactacgatggcctcgattctcaagccgtccaagggggggaggttctttcactctctgctggaacctatgatgtgaaacctcagactggaggtccattcggaaccatgaagcagtcagctgagcttgcttacggtgctaacaatggtcttgatattgctgtcaggctcttggagccaatcaaggagcagttccctattctctcttacactgacttctaccaggtaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

186

Amino Acids

20.52

Weight (kDa)

6.07

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	2 cut(s)	161, 175
AfiI	CCNNNNNNNGG	3 cut(s)	363, 367, 416
AgsI	TTSAA	1 cut(s)	254
AhdI	GACNNNNNGTC	1 cut(s)	420
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	5 cut(s)	122, 212, 222, 449, 454
AluI	AGCT	5 cut(s)	122, 212, 222, 449, 454
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	422
AsuII	TTCGAA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	331
BccI	CCATC	2 cut(s)	322, 332
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	39, 213
BfoI	RGCGCY	1 cut(s)	230
BlpI	GCTNAGC	2 cut(s)	223, 450
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	1 cut(s)	422
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	4 cut(s)	328, 394, 433, 504
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	1 cut(s)	40
BmtI	GCTAGC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	5
Bpu1102I	GCTNAGC	2 cut(s)	223, 450
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 367, 416
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	363, 367, 416
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	5 cut(s)	19, 210, 237, 425, 441
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	257
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	363, 367, 416
BsmAI	GTCTC	1 cut(s)	283
BsmI	GAATGC	2 cut(s)	73, 191
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	51, 79
Bsp1720I	GCTNAGC	2 cut(s)	223, 450
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	5 cut(s)	18, 209, 236, 424, 442
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	328, 394, 433, 504
BspOI	GCTAGC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	74
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	2 cut(s)	51, 79
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	40, 456
BstDEI	CTNAG	7 cut(s)	5, 137, 163, 196, 223, 411, 450
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	54, 82
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	51, 79
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 464, 502
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	549
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	204, 537
Cac8I	GCNNGC	2 cut(s)	40, 456
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	422
CsiI	ACCWGGT	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	160, 174
CviAII	CATG	3 cut(s)	19, 49, 436
CviQI	GTAC	2 cut(s)	160, 174
DdeI	CTNAG	7 cut(s)	5, 137, 163, 196, 223, 411, 450
DpnI	GATC	2 cut(s)	53, 81
DpnII	GATC	2 cut(s)	51, 79
DriI	GACNNNNNGTC	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	22, 52, 439
FaiI	YATR	4 cut(s)	20, 50, 399, 437
FatI	CATG	3 cut(s)	18, 48, 435
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	331
FspBI	CTAG	2 cut(s)	39, 213
GlaI	GCGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	22, 52, 439
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	2 cut(s)	284, 347
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	414, 431
Hpy188III	TCNNGA	3 cut(s)	49, 288, 479
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	4 cut(s)	31, 71, 143, 191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 464, 502
HpyF3I	CTNAG	7 cut(s)	5, 137, 163, 196, 223, 411, 450
Hsp92II	CATG	3 cut(s)	22, 52, 439
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	51, 79
LmnI	GCTCC	4 cut(s)	119, 326, 502, 514
LpnPI	CCDG	6 cut(s)	195, 294, 375, 402, 478, 536
LweI	GCATC	1 cut(s)	40
MabI	ACCWGGT	1 cut(s)	549
MaeI	CTAG	2 cut(s)	39, 213
MalI	GATC	2 cut(s)	53, 81
MboI	GATC	2 cut(s)	51, 79
MboII	GAAGA	3 cut(s)	110, 119, 309
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	2 cut(s)	126, 239
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	8 cut(s)	103, 273, 278, 304, 353, 364, 413, 420
Mph1103I	ATGCAT	1 cut(s)	33
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	2 cut(s)	47, 336
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	551
Mva1269I	GAATGC	2 cut(s)	73, 191
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	3 cut(s)	455, 464, 502
NdeII	GATC	2 cut(s)	51, 79
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	3 cut(s)	22, 52, 439
NlaIV	GGNNCC	4 cut(s)	328, 394, 433, 504
NsiI	ATGCAT	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	286
PagI	TCATGA	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PctI	GAATGC	2 cut(s)	73, 191
PfeI	GAWTC	1 cut(s)	347
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	4 cut(s)	328, 394, 433, 504
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	161, 175
RsaNI	GTAC	2 cut(s)	160, 174
RseI	CAYNNNNRTG	2 cut(s)	47, 336
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	51, 79
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	331
SexAI	ACCWGGT	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	422
SlaI	CTCGAG	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	47, 336
SmlI	CTYRAG	2 cut(s)	286, 351
SmoI	CTYRAG	2 cut(s)	286, 351
Sse9I	AATT	2 cut(s)	126, 239
SspMI	CTAG	2 cut(s)	39, 213
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	5 cut(s)	58, 65, 178, 287, 345
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	126, 239
TatI	WGTACW	2 cut(s)	159, 173
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	204, 544
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	2 cut(s)	204, 544
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	126
XhoI	CTCGAG	1 cut(s)	286
XspI	CTAG	2 cut(s)	39, 213
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.