Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004927.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Forward (+)

134341 .. 135538

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004927.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgatcggtcgaagtttggatgcaaagaaagatccatttcgtccaaaggaagatgacgaagaggtgttgggagctgaaattcctcatctaagtgcaataggcgcattattgtacttagcccaatgtactcgaccagacattgcattctcagtgaacttgctagctatatttagctcagcgccaacagagacaagagggaccgcaaatggaactgcaatccctaaaggaaatgttgatggcgaaagcgccactcactacactgaaacgccaaatgacgttttggttggttttgctgatactggcatccagctggatttaggccaccaagttaacttgggccatacaaatgatctaggcacccaactgcaattgggtccaccttctcctacaccaatcaccacctccgccgtcgcacgcataggatgtcgttcatcaaatcttcgacacttcaggcagagggactcttttgcagtggcaaagccggtcaccttggccactgagcacgagactctttcccctgccatgatcgaaccactggtagatcgttcgccgtcggccaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

187

Amino Acids

19.89

Weight (kDa)

5.27

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	2 cut(s)	201, 405
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	2 cut(s)	492, 555
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	433
AfaI	GTAC	2 cut(s)	113, 127
AluBI	AGCT	4 cut(s)	74, 164, 174, 310
AluI	AGCT	4 cut(s)	74, 164, 174, 310
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	182, 500
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	4 cut(s)	319, 337, 492, 555
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	3 cut(s)	104, 181, 248
AspS9I	GGNCC	3 cut(s)	198, 337, 374
AsuHPI	GGTGA	2 cut(s)	388, 478
AsuNHI	GCTAGC	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	198, 374
BalI	TGGCCA	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	504
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	392, 535
BcoDI	GTCTC	2 cut(s)	182, 500
BfaI	CTAG	2 cut(s)	161, 353
BfoI	RGCGCY	2 cut(s)	182, 249
BlpI	GCTNAGC	1 cut(s)	175
Bme18I	GGWCC	2 cut(s)	198, 374
BmgT120I	GGNCC	3 cut(s)	198, 337, 374
BmiI	GGNNCC	3 cut(s)	199, 358, 375
BmsI	GCATC	2 cut(s)	10, 312
BmtI	GCTAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	489
Bse118I	RCCGGY	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	304, 540
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	3 cut(s)	25, 303, 428
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	3 cut(s)	162, 189, 489
BseNI	ACTGG	2 cut(s)	304, 540
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	4 cut(s)	321, 339, 494, 557
BshNI	GGYRCC	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	2 cut(s)	211, 473
BsmAI	GTCTC	2 cut(s)	182, 500
BsmFI	GGGAC	2 cut(s)	211, 473
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	4 cut(s)	321, 339, 494, 557
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	5 cut(s)	3, 31, 349, 525, 541
Bsp1720I	GCTNAGC	1 cut(s)	175
BspACI	CCGC	2 cut(s)	201, 405
BspANI	GGCC	4 cut(s)	321, 339, 494, 557
BspCNI	CTCAG	3 cut(s)	161, 188, 490
BspLI	GGNNCC	3 cut(s)	199, 358, 375
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	481
BsrI	ACTGG	2 cut(s)	304, 540
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	5 cut(s)	3, 31, 349, 525, 541
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	162, 415
BstDEI	CTNAG	5 cut(s)	89, 115, 148, 175, 498
BstEII	GGTNACC	1 cut(s)	484
BstF5I	GGATG	3 cut(s)	25, 303, 428
BstH2I	RGCGCY	2 cut(s)	182, 249
BstHHI	GCGC	3 cut(s)	104, 181, 248
BstKTI	GATC	5 cut(s)	6, 34, 352, 528, 544
BstMAI	GTCTC	2 cut(s)	182, 500
BstMBI	GATC	5 cut(s)	3, 31, 349, 525, 541
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	321, 339, 494, 557
BtsCI	GGATG	3 cut(s)	25, 303, 428
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	5 cut(s)	156, 258, 477, 495, 533
Cac8I	GCNNGC	2 cut(s)	162, 415
CfoI	GCGC	3 cut(s)	104, 181, 248
Cfr10I	RCCGGY	1 cut(s)	481
Cfr13I	GGNCC	3 cut(s)	198, 337, 374
Csp6I	GTAC	2 cut(s)	112, 126
CviAII	CATG	1 cut(s)	523
CviQI	GTAC	2 cut(s)	112, 126
DdeI	CTNAG	5 cut(s)	89, 115, 148, 175, 498
DpnI	GATC	5 cut(s)	5, 33, 351, 527, 543
DpnII	GATC	5 cut(s)	3, 31, 349, 525, 541
EaeI	YGGCCR	2 cut(s)	492, 555
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	489
Eco47I	GGWCC	2 cut(s)	198, 374
Eco57I	CTGAAG	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	1 cut(s)	526
FaiI	YATR	4 cut(s)	167, 342, 419, 524
FaqI	GGGAC	2 cut(s)	211, 473
FatI	CATG	1 cut(s)	522
FokI	GGATG	3 cut(s)	32, 290, 435
FspBI	CTAG	2 cut(s)	161, 353
GlaI	GCGC	3 cut(s)	103, 180, 247
HaeII	RGCGCY	2 cut(s)	182, 249
HaeIII	GGCC	4 cut(s)	321, 339, 494, 557
HapII	CCGG	1 cut(s)	482
HhaI	GCGC	3 cut(s)	104, 181, 248
Hin1II	CATG	1 cut(s)	526
Hin6I	GCGC	3 cut(s)	102, 179, 246
HinP1I	GCGC	3 cut(s)	102, 179, 246
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	2 cut(s)	461, 508
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	2 cut(s)	388, 478
Hpy166II	GTNNAC	3 cut(s)	154, 331, 377
Hpy8I	GTNNAC	3 cut(s)	154, 331, 377
Hpy99I	CGWCG	2 cut(s)	413, 556
HpyAV	CCTTC	1 cut(s)	390
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	6 cut(s)	23, 95, 143, 215, 367, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	5 cut(s)	89, 115, 148, 175, 498
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	526
HspAI	GCGC	3 cut(s)	102, 179, 246
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	3, 31, 349, 525, 541
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	147, 285, 296, 320, 436, 495, 521, 531
LweI	GCATC	2 cut(s)	10, 312
MaeI	CTAG	2 cut(s)	161, 353
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	5 cut(s)	5, 33, 351, 527, 543
MboI	GATC	5 cut(s)	3, 31, 349, 525, 541
MboII	GAAGA	3 cut(s)	62, 71, 431
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	504
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	3 cut(s)	78, 368, 559
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	455, 502
MnlI	CCTC	5 cut(s)	55, 93, 188, 412, 450
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	2 cut(s)	90, 345
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	1 cut(s)	482
MunI	CAATTG	1 cut(s)	368
Mva1269I	GAATGC	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	5 cut(s)	3, 31, 349, 525, 541
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	526
NlaIV	GGNNCC	3 cut(s)	199, 358, 375
NmuCI	GTSAC	1 cut(s)	484
PctI	GAATGC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	455, 502
PpsI	GAGTC	2 cut(s)	455, 502
PspEI	GGTNACC	1 cut(s)	484
PspN4I	GGNNCC	3 cut(s)	199, 358, 375
PspPI	GGNCC	3 cut(s)	198, 337, 374
PsuI	RGATCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	2 cut(s)	113, 127
RsaNI	GTAC	2 cut(s)	112, 126
RseI	CAYNNNNRTG	2 cut(s)	90, 345
SaqAI	TTAA	1 cut(s)	330
Sau3AI	GATC	5 cut(s)	3, 31, 349, 525, 541
Sau96I	GGNCC	3 cut(s)	198, 337, 374
SchI	GAGTC	2 cut(s)	455, 502
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	9 cut(s)	66, 76, 166, 176, 279, 312, 382, 404, 491
SfaNI	GCATC	2 cut(s)	10, 312
SinI	GGWCC	2 cut(s)	198, 374
SmiMI	CAYNNNNRTG	2 cut(s)	90, 345
Sse9I	AATT	3 cut(s)	78, 368, 559
SsiI	CCGC	2 cut(s)	201, 405
SspMI	CTAG	2 cut(s)	161, 353
StyI	CCWWGG	1 cut(s)	489
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	10, 130, 442, 528
TasI	AATT	3 cut(s)	78, 368, 559
TatI	WGTACW	2 cut(s)	111, 125
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	5 cut(s)	156, 265, 477, 502, 540
TseFI	GTSAC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	1 cut(s)	420
TspRI	CASTG	5 cut(s)	156, 265, 477, 502, 540
VpaK11BI	GGWCC	2 cut(s)	198, 374
XapI	RAATTY	1 cut(s)	78
XspI	CTAG	2 cut(s)	161, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.