Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000805.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Reverse (-)

151381 .. 154359

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000805.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgcttaggcgttttgacaaggtcaaggcttcaagtacccccatgatcatccgtagtcttgatcctgaaaaggatcctcttcgttcgaaggatgatgacgaagatgtgctagaggaggaagtgccctacataagtacaataggcgcattattgtacttagctccatgcacaagaccggacatcccatatgttgtgaacttgttagctaagagagatgatggattcggacccatcacacaccaggaacgccgccaacactggcctgtgtcccctctccccatcccaaaacgaagttgcgttttggaaggttttactgttgctggtcatcagggggagatgtctacatatatggtctcgaaacgtgaaagcgacaatgaagaggtgacacaatcagctttggaatcatttaaggttggttactttccttatataattgatcaagctctttcttcacttcaaagtaggtttgaacaatttaagaaatatggagaagattttggatttttattcaagttggagaagttgacgtctacagataataaaagattgatgaattattgtatgaatcttgaagatttgttgaaagatggtgttgtttctgacattaatgggagtgatttattttctgagttgtgctacttgaaaggagctataccaaatgaaacaaaaagggcagttgaagtgttgaactatttgaaccaaatggatgaccgatcttcgtctcttccgagaccgatcttcatcaattatacatcaaccaagaccggcagccttcaattcagaccgcctgttctttcaatccagtccggcttcttcagaatcaacgtgtgccgtcaacctgtgtcgttcaacccagaccggtcggtttccagatcgcccacgatcctcgctcaaccacagcagcgtcgctcagccgcatcgttcggtccacatcagcgtcgctcactcagggaggttccagatcgatcgattccagcccagatcgcccaaactcgggacgattccagatcgatctcagttgatgaactcggtcaactcagtgagtcaacccgcctcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4371 Dimer_Tnp_hAT

Protein Analysis

353

Amino Acids

40.13

Weight (kDa)

6.48

Isoelectric Point (pI)

63.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	530
AccI	GTMKAC	2 cut(s)	341, 530
AciI	CCGC	4 cut(s)	250, 785, 915, 1051
AclWI	GGATC	4 cut(s)	56, 68, 81, 877
AcuI	CTGAAG	1 cut(s)	799
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	3 cut(s)	37, 136, 155
AfiI	CCNNNNNNNGG	2 cut(s)	993, 994
AflIII	ACRYGT	1 cut(s)	825
AgeI	ACCGGT	1 cut(s)	858
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	5 cut(s)	161, 206, 395, 443, 650
AluI	AGCT	5 cut(s)	161, 206, 395, 443, 650
Alw26I	GTCTC	3 cut(s)	358, 724, 726
AlwI	GGATC	4 cut(s)	56, 68, 81, 877
Ama87I	CYCGRG	1 cut(s)	993
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	768, 901
AseI	ATTAAT	1 cut(s)	606
AsiGI	ACCGGT	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	227, 926
AsuHPI	GGTGA	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	993
AvaII	GGWCC	2 cut(s)	227, 926
BaeGI	GKGCMC	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	780, 913
BccI	CCATC	4 cut(s)	212, 239, 287, 581
BceAI	ACGGC	1 cut(s)	816
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	2 cut(s)	45, 436
BcoDI	GTCTC	3 cut(s)	358, 724, 726
BfaI	CTAG	2 cut(s)	110, 1060
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	4 cut(s)	250, 769, 902, 915
BlpI	GCTNAGC	1 cut(s)	910
BlsI	GCNGC	4 cut(s)	251, 770, 903, 916
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	2 cut(s)	227, 926
BmeT110I	CYCGRG	1 cut(s)	993
BmgT120I	GGNCC	2 cut(s)	227, 926
BmiI	GGNNCC	3 cut(s)	75, 229, 957
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	5
Bpu1102I	GCTNAGC	1 cut(s)	910
Bpu14I	TTCGAA	1 cut(s)	86
Bsa29I	ATCGAT	3 cut(s)	964, 968, 1010
BsaBI	GATNNNNATC	1 cut(s)	740
BsaHI	GRCGYC	1 cut(s)	527
BsaI	GGTCTC	2 cut(s)	358, 724
BsaWI	WCCGGW	2 cut(s)	175, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	993, 994
Bse118I	RCCGGY	2 cut(s)	764, 858
Bse1I	ACTGG	2 cut(s)	263, 802
Bse8I	GATNNNNATC	1 cut(s)	740
BseBI	CCWGG	1 cut(s)	242
BseCI	ATCGAT	3 cut(s)	964, 968, 1010
BseGI	GGATG	5 cut(s)	48, 97, 180, 279, 712
BseJI	GATNNNNATC	1 cut(s)	740
BseLI	CCNNNNNNNGG	2 cut(s)	993, 994
BseMII	CTCAG	5 cut(s)	618, 924, 961, 1029, 1051
BseNI	ACTGG	2 cut(s)	263, 802
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	780, 913
Bsh1285I	CGRYCG	2 cut(s)	863, 968
BshFI	GGCC	1 cut(s)	262
BshTI	ACCGGT	1 cut(s)	858
BshVI	ATCGAT	3 cut(s)	964, 968, 1010
BsiEI	CGRYCG	2 cut(s)	863, 968
BsiHKCI	CYCGRG	1 cut(s)	993
BsiSI	CCGG	4 cut(s)	176, 765, 807, 859
BslFI	GGGAC	2 cut(s)	253, 1010
BslI	CCNNNNNNNGG	2 cut(s)	993, 994
BsmAI	GTCTC	3 cut(s)	358, 724, 726
BsmBI	CGTCTC	1 cut(s)	726
BsmFI	GGGAC	2 cut(s)	253, 1010
BsnI	GGCC	1 cut(s)	262
Bso31I	GGTCTC	2 cut(s)	358, 724
BsoBI	CYCGRG	1 cut(s)	993
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp1720I	GCTNAGC	1 cut(s)	910
BspACI	CCGC	4 cut(s)	250, 785, 915, 1051
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	5 cut(s)	619, 923, 960, 1028, 1050
BspDI	ATCGAT	3 cut(s)	964, 968, 1010
BspLI	GGNNCC	3 cut(s)	75, 229, 957
BspPI	GGATC	4 cut(s)	56, 68, 81, 877
BspT104I	TTCGAA	1 cut(s)	86
BspTNI	GGTCTC	2 cut(s)	358, 724
BsrFI	RCCGGY	2 cut(s)	764, 858
BsrI	ACTGG	2 cut(s)	263, 802
BssAI	RCCGGY	2 cut(s)	764, 858
BssNI	GRCGYC	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	3 cut(s)	84, 372, 729
BstACI	GRCGYC	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	86
BstDEI	CTNAG	8 cut(s)	5, 157, 207, 627, 910, 947, 1015, 1037
BstF5I	GGATG	5 cut(s)	48, 97, 180, 279, 712
BstHHI	GCGC	1 cut(s)	146
BstMAI	GTCTC	3 cut(s)	358, 724, 726
BstMCI	CGRYCG	2 cut(s)	863, 968
BstMWI	GCNNNNNNNGC	1 cut(s)	983
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	780, 913
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	3 cut(s)	964, 968, 1010
BsuRI	GGCC	1 cut(s)	262
BsuTUI	ATCGAT	3 cut(s)	964, 968, 1010
BtsCI	GGATG	5 cut(s)	48, 97, 180, 279, 712
BtsIMutI	CAGTG	2 cut(s)	256, 1045
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	2 cut(s)	764, 858
Cfr13I	GGNCC	2 cut(s)	227, 926
ClaI	ATCGAT	3 cut(s)	964, 968, 1010
CseI	GACGC	2 cut(s)	893, 926
Csp6I	GTAC	3 cut(s)	36, 135, 154
CspAI	ACCGGT	1 cut(s)	858
CviAII	CATG	2 cut(s)	43, 165
CviQI	GTAC	3 cut(s)	36, 135, 154
DdeI	CTNAG	8 cut(s)	5, 157, 207, 627, 910, 947, 1015, 1037
Eam1104I	CTCTTC	3 cut(s)	84, 372, 729
EarI	CTCTTC	3 cut(s)	84, 372, 729
Eco31I	GGTCTC	2 cut(s)	358, 724
Eco47I	GGWCC	2 cut(s)	227, 926
Eco57I	CTGAAG	1 cut(s)	799
Eco88I	CYCGRG	1 cut(s)	993
EcoRII	CCWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	726
FaeI	CATG	2 cut(s)	46, 168
FaqI	GGGAC	2 cut(s)	253, 1010
FatI	CATG	2 cut(s)	42, 164
FauI	CCCGC	1 cut(s)	1058
FauNDI	CATATG	1 cut(s)	187
FbaI	TGATCA	2 cut(s)	45, 436
FblI	GTMKAC	2 cut(s)	341, 530
Fnu4HI	GCNGC	4 cut(s)	250, 769, 902, 915
FokI	GGATG	5 cut(s)	35, 104, 167, 266, 719
Fsp4HI	GCNGC	4 cut(s)	250, 769, 902, 915
FspBI	CTAG	2 cut(s)	110, 1060
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	4 cut(s)	250, 769, 902, 915
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	4 cut(s)	176, 765, 807, 859
HgaI	GACGC	2 cut(s)	893, 926
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	2 cut(s)	46, 168
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	4 cut(s)	525, 836, 1034, 1047
HindII	GTYRAC	4 cut(s)	525, 836, 1034, 1047
HinfI	GANTC	7 cut(s)	222, 401, 565, 819, 970, 1001, 1043
HpaII	CCGG	4 cut(s)	176, 765, 807, 859
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	8 cut(s)	196, 342, 525, 531, 836, 929, 1034, 1047
Hpy188I	TCNGA	6 cut(s)	227, 601, 628, 729, 782, 818
Hpy188III	TCNNGA	8 cut(s)	59, 65, 355, 569, 870, 959, 995, 1005
Hpy8I	GTNNAC	8 cut(s)	196, 342, 525, 531, 836, 929, 1034, 1047
Hpy99I	CGWCG	2 cut(s)	909, 942
HpyAV	CCTTC	3 cut(s)	82, 299, 782
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	3 cut(s)	361, 527, 825
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	983
HpyF3I	CTNAG	8 cut(s)	5, 157, 207, 627, 910, 947, 1015, 1037
HpySE526I	ACGT	3 cut(s)	361, 527, 825
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	46, 168
HspAI	GCGC	1 cut(s)	144
Ksp22I	TGATCA	2 cut(s)	45, 436
LmnI	GCTCC	2 cut(s)	166, 647
Lsp1109I	GCAGC	2 cut(s)	780, 913
LweI	GCATC	1 cut(s)	926
MaeI	CTAG	2 cut(s)	110, 1060
MaeII	ACGT	3 cut(s)	361, 527, 825
MaeIII	GTNAC	2 cut(s)	382, 416
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	5 cut(s)	432, 473, 553, 745, 776
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	7 cut(s)	87, 106, 109, 282, 373, 896, 946
MseI	TTAA	3 cut(s)	408, 477, 606
MspI	CCGG	4 cut(s)	176, 765, 807, 859
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	983
NdeI	CATATG	1 cut(s)	187
NlaIII	CATG	2 cut(s)	46, 168
NlaIV	GGNNCC	3 cut(s)	75, 229, 957
NmuCI	GTSAC	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	725
PfeI	GAWTC	6 cut(s)	222, 401, 565, 819, 970, 1001
PflFI	GACNNNGTC	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	858
PkrI	GCNGC	4 cut(s)	251, 770, 903, 916
Ple19I	CGATCG	1 cut(s)	968
PleI	GAGTC	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	1051
PshBI	ATTAAT	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	75, 229, 957
PspPI	GGNCC	2 cut(s)	227, 926
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	968
RsaI	GTAC	3 cut(s)	37, 136, 155
RsaNI	GTAC	3 cut(s)	36, 135, 154
SaqAI	TTAA	3 cut(s)	408, 477, 606
SatI	GCNGC	4 cut(s)	250, 769, 902, 915
Sau96I	GGNCC	2 cut(s)	227, 926
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	926
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	2 cut(s)	227, 926
Sse9I	AATT	5 cut(s)	432, 473, 553, 745, 776
SsiI	CCGC	4 cut(s)	250, 785, 915, 1051
SspMI	CTAG	2 cut(s)	110, 1060
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	3 cut(s)	364, 530, 828
TaqI	TCGA	5 cut(s)	86, 356, 964, 968, 1010
TaqII	GACCGA	4 cut(s)	726, 748, 914, 1019
TasI	AATT	5 cut(s)	432, 473, 553, 745, 776
TatI	WGTACW	2 cut(s)	134, 153
TauI	GCSGC	2 cut(s)	252, 917
TfiI	GAWTC	6 cut(s)	222, 401, 565, 819, 970, 1001
Tru1I	TTAA	3 cut(s)	408, 477, 606
Tru9I	TTAA	3 cut(s)	408, 477, 606
TscAI	CASTG	2 cut(s)	263, 1045
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	2 cut(s)	768, 901
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	6 cut(s)	390, 566, 578, 675, 730, 1038
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	263, 1045
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	227, 926
VspI	ATTAAT	1 cut(s)	606
XmiI	GTMKAC	2 cut(s)	341, 530
XspI	CTAG	2 cut(s)	110, 1060
ZraI	GACGTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.