Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005433.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Reverse (-)

15206 .. 19851

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005433.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgcttaggcattttgacaaggtcaaaccttcaagcaccctcatgatcgtctgtagtcttaatcctaaaaatgatcctcttcgtctaaaggatgatgacgaagatgtgctagaggcagaagtgccttacttgagtacaataggcgcattattattcttagctcaatgcacaggaccgaacatctcatttgcagtgaacttagagaagatggattctgacccattacacaccagaaacgccgccaacgctggcctgtgttctctatccccatcccaaaacgatataagtgttttggaaggttttgctgatgctaggtacctctctaacccacacaaagtcattaggaggaggcgcggacatcagggggagatgtctacatgttcacctcgaaacgtgaaggattcctggtcctcctcctctaaaggaccaactattgaacaccagaaaaagattggtctttgggctgtgaagctaccttcagcagatgctatagttgtacgaagagcacttggagctctgacggaaaatcccggcgttggaatctttattgggctcttgagtcagttttccgttgggaggtggcttctcttaaagtttctctcatttttcagtgttggatggttcaggaagcagggtccctctgatgaggaggtgagaagtgcttcttttaagatgtggtttgttggacatggtttcggcaacaggagtcttgcttctcagggaaacaaaaaaattgatatggaaatagtaataagagttgtgggacctgaaattggctacttaacaaccccgataattctacttcagtgtgcacttattgttccgagccaacgccacaatcttccaaagggaggagttttcccagctgggattgtatttggcccaactgatctccaagaaaggctacaagaaaatggacgcttgaagaagaagtcaggtcaagggactctcccgacgactgcaccccgcgccattgggaagtctagcgaaaacccttaccagaaggtttacgctagctgtttcaagcataagacctctaattacaggccgcattgtcacgcggactgtcgtggtctttctgaagaacaagtgactcaaaggttctctcgtcagtcgcaatcacccaacatgtcaactggacgagaagagagccgccagaccattactgagggtcagagagttaatattgatcaggctagcgagcctgttacccccaccactgtcactactgcagtggggagtggagaaagagaggcttttttttctgaagcctattccagaaggagcgacctccgaggtcaggttcacaatcatcttgttgaatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

442

Amino Acids

48.89

Weight (kDa)

9.32

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	3 cut(s)	354, 969, 1061
AciI	CCGC	6 cut(s)	240, 354, 967, 1049, 1061, 1153
AclWI	GGATC	1 cut(s)	68
AcuI	CTGAAG	4 cut(s)	462, 788, 1101, 1287
AfaI	GTAC	3 cut(s)	136, 317, 498
AfiI	CCNNNNNNNGG	5 cut(s)	536, 576, 773, 851, 1300
AflIII	ACRYGT	2 cut(s)	377, 1128
AgsI	TTSAA	5 cut(s)	33, 437, 925, 1024, 1322
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	5 cut(s)	161, 472, 515, 866, 1017
AluI	AGCT	5 cut(s)	161, 472, 515, 866, 1017
Alw21I	GWGCWC	3 cut(s)	508, 517, 814
Alw44I	GTGCAC	1 cut(s)	810
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	3 cut(s)	250, 880, 1046
ApaLI	GTGCAC	1 cut(s)	810
Asp700I	GAANNNNTTC	1 cut(s)	661
Asp718I	GGTACC	1 cut(s)	315
AspLEI	GCGC	3 cut(s)	146, 354, 971
AspS9I	GGNCC	6 cut(s)	173, 408, 425, 635, 764, 881
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	3 cut(s)	375, 664, 1113
AsuNHI	GCTAGC	2 cut(s)	1013, 1196
AvaII	GGWCC	5 cut(s)	173, 408, 425, 635, 764
BaeGI	GKGCMC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	2 cut(s)	517, 555
Bbv12I	GWGCWC	3 cut(s)	508, 517, 814
BccI	CCATC	3 cut(s)	202, 277, 612
BciT130I	CCWGG	1 cut(s)	406
BclI	TGATCA	1 cut(s)	1189
BcnI	CCSGG	1 cut(s)	531
BfaI	CTAG	5 cut(s)	110, 312, 984, 1014, 1197
BfmI	CTRYAG	3 cut(s)	52, 489, 1230
BisI	GCNGC	3 cut(s)	240, 1049, 1153
BlsI	GCNGC	3 cut(s)	241, 1050, 1154
Bme1390I	CCNGG	2 cut(s)	406, 531
Bme18I	GGWCC	5 cut(s)	173, 408, 425, 635, 764
BmgT120I	GGNCC	6 cut(s)	173, 408, 425, 635, 764, 881
BmiI	GGNNCC	4 cut(s)	317, 636, 637, 765
BmrFI	CCNGG	2 cut(s)	406, 531
BmsI	GCATC	2 cut(s)	298, 475
BmtI	GCTAGC	2 cut(s)	1017, 1200
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	151, 577
BpuMI	CCSGG	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	1294
Bsc4I	CCNNNNNNNGG	5 cut(s)	536, 576, 773, 851, 1300
Bse1I	ACTGG	1 cut(s)	1141
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	1294
BseGI	GGATG	3 cut(s)	97, 269, 623
BseLI	CCNNNNNNNGG	5 cut(s)	536, 576, 773, 851, 1300
BseMII	CTCAG	2 cut(s)	731, 1158
BseNI	ACTGG	1 cut(s)	1141
BseRI	GAGGAG	5 cut(s)	361, 403, 406, 662, 867
BseSI	GKGCMC	1 cut(s)	814
BseYI	CCCAGC	2 cut(s)	862, 866
BsgI	GTGCAG	1 cut(s)	945
Bsh1236I	CGCG	3 cut(s)	354, 969, 1061
BshFI	GGCC	3 cut(s)	252, 882, 1048
BshNI	GGYRCC	1 cut(s)	315
BsiHKAI	GWGCWC	3 cut(s)	508, 517, 814
BsiSI	CCGG	1 cut(s)	531
BslFI	GGGAC	3 cut(s)	621, 777, 958
BslI	CCNNNNNNNGG	5 cut(s)	536, 576, 773, 851, 1300
BsmFI	GGGAC	3 cut(s)	621, 777, 958
BsnI	GGCC	3 cut(s)	252, 882, 1048
Bsp1286I	GDGCHC	4 cut(s)	508, 517, 555, 814
Bsp143I	GATC	4 cut(s)	45, 73, 889, 1189
BspACI	CCGC	6 cut(s)	240, 354, 967, 1049, 1061, 1153
BspANI	GGCC	3 cut(s)	252, 882, 1048
BspCNI	CTCAG	2 cut(s)	730, 1159
BspFNI	CGCG	3 cut(s)	354, 969, 1061
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	4 cut(s)	317, 636, 637, 765
BspMAI	CTGCAG	1 cut(s)	1234
BspOI	GCTAGC	2 cut(s)	1017, 1200
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	1141
BssECI	CCNNGG	1 cut(s)	1294
BssMI	GATC	4 cut(s)	45, 73, 889, 1189
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	1067, 1222
Bst6I	CTCTTC	3 cut(s)	84, 496, 1140
BstC8I	GCNNGC	4 cut(s)	250, 1015, 1198, 1202
BstDEI	CTNAG	5 cut(s)	5, 157, 199, 717, 1167
BstF5I	GGATG	3 cut(s)	97, 269, 623
BstFNI	CGCG	3 cut(s)	354, 969, 1061
BstHHI	GCGC	3 cut(s)	146, 354, 971
BstKTI	GATC	4 cut(s)	48, 76, 892, 1192
BstMBI	GATC	4 cut(s)	45, 73, 889, 1189
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 512, 968
BstNI	CCWGG	1 cut(s)	406
BstNSI	RCATGY	2 cut(s)	381, 1132
BstSCI	CCNGG	2 cut(s)	404, 529
BstSFI	CTRYAG	3 cut(s)	52, 489, 1230
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	3 cut(s)	354, 969, 1061
BsuRI	GGCC	3 cut(s)	252, 882, 1048
BtsCI	GGATG	3 cut(s)	97, 269, 623
BtsI	GCAGTG	2 cut(s)	198, 1239
BtsIMutI	CAGTG	5 cut(s)	198, 616, 812, 1218, 1239
Cac8I	GCNNGC	4 cut(s)	250, 1015, 1198, 1202
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	3 cut(s)	146, 354, 971
Cfr13I	GGNCC	6 cut(s)	173, 408, 425, 635, 764, 881
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	3 cut(s)	135, 316, 497
CviAII	CATG	4 cut(s)	43, 378, 689, 1129
CviQI	GTAC	3 cut(s)	135, 316, 497
DdeI	CTNAG	5 cut(s)	5, 157, 199, 717, 1167
DpnI	GATC	4 cut(s)	47, 75, 891, 1191
DpnII	GATC	4 cut(s)	45, 73, 889, 1189
Eam1104I	CTCTTC	3 cut(s)	84, 496, 1140
EarI	CTCTTC	3 cut(s)	84, 496, 1140
Ecl136II	GAGCTC	1 cut(s)	515
Eco24I	GRGCYC	2 cut(s)	517, 555
Eco47I	GGWCC	5 cut(s)	173, 408, 425, 635, 764
Eco53kI	GAGCTC	1 cut(s)	515
Eco57I	CTGAAG	4 cut(s)	462, 788, 1101, 1287
EcoICRI	GAGCTC	1 cut(s)	515
EcoO109I	RGGNCCY	2 cut(s)	635, 764
EcoRII	CCWGG	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	517, 555
FaeI	CATG	4 cut(s)	46, 381, 692, 1132
FaiI	YATR	8 cut(s)	44, 284, 379, 491, 690, 740, 1029, 1130
FalI	AAGNNNNNCTT	4 cut(s)	649, 681, 1240, 1272
FaqI	GGGAC	3 cut(s)	621, 777, 958
FatI	CATG	4 cut(s)	42, 377, 688, 1128
FauI	CCCGC	1 cut(s)	974
FbaI	TGATCA	1 cut(s)	1189
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	3 cut(s)	240, 1049, 1153
FokI	GGATG	3 cut(s)	104, 256, 630
FriOI	GRGCYC	2 cut(s)	517, 555
Fsp4HI	GCNGC	3 cut(s)	240, 1049, 1153
FspBI	CTAG	5 cut(s)	110, 312, 984, 1014, 1197
GlaI	GCGC	3 cut(s)	145, 353, 970
GluI	GCNGC	3 cut(s)	240, 1049, 1153
GsaI	CCCAGC	2 cut(s)	866, 870
HaeIII	GGCC	3 cut(s)	252, 882, 1048
HapII	CCGG	1 cut(s)	531
HgaI	GACGC	1 cut(s)	927
HhaI	GCGC	3 cut(s)	146, 354, 971
Hin1II	CATG	4 cut(s)	46, 381, 692, 1132
Hin6I	GCGC	3 cut(s)	144, 352, 969
HinP1I	GCGC	3 cut(s)	144, 352, 969
HincII	GTYRAC	1 cut(s)	1134
HindII	GTYRAC	1 cut(s)	1134
HinfI	GANTC	7 cut(s)	212, 401, 540, 559, 706, 946, 1093
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	3 cut(s)	375, 664, 1113
Hpy166II	GTNNAC	7 cut(s)	196, 375, 383, 812, 1009, 1134, 1306
Hpy188I	TCNGA	8 cut(s)	217, 519, 643, 825, 1081, 1176, 1267, 1295
Hpy188III	TCNNGA	5 cut(s)	43, 556, 625, 952, 1278
Hpy8I	GTNNAC	7 cut(s)	196, 375, 383, 812, 1009, 1134, 1306
Hpy99I	CGWCG	1 cut(s)	958
HpyAV	CCTTC	6 cut(s)	39, 290, 391, 486, 997, 1275
HpyCH4III	ACNGT	2 cut(s)	1067, 1222
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	5 cut(s)	168, 191, 812, 962, 1232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 512, 968
HpyF3I	CTNAG	5 cut(s)	5, 157, 199, 717, 1167
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	4 cut(s)	46, 381, 692, 1132
HspAI	GCGC	3 cut(s)	144, 352, 969
KflI	GGGWCCC	1 cut(s)	635
KpnI	GGTACC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	1189
Kzo9I	GATC	4 cut(s)	45, 73, 889, 1189
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	2 cut(s)	512, 1284
LweI	GCATC	2 cut(s)	298, 475
MaeI	CTAG	5 cut(s)	110, 312, 984, 1014, 1197
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	4 cut(s)	1055, 1090, 1207, 1222
MalI	GATC	4 cut(s)	47, 75, 891, 1191
MboI	GATC	4 cut(s)	45, 73, 889, 1189
MboII	GAAGA	9 cut(s)	71, 113, 217, 513, 833, 937, 940, 1094, 1157
MhlI	GDGCHC	4 cut(s)	508, 517, 555, 814
MluCI	AATT	4 cut(s)	732, 771, 795, 1039
MlyI	GAGTC	4 cut(s)	568, 715, 940, 1087
MmeI	TCCRAC	3 cut(s)	517, 595, 664
MroXI	GAANNNNTTC	1 cut(s)	661
MseI	TTAA	5 cut(s)	60, 590, 669, 782, 1182
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	2 cut(s)	406, 531
MvaI	CCWGG	1 cut(s)	406
MvnI	CGCG	3 cut(s)	354, 969, 1061
MwoI	GCNNNNNNNGC	3 cut(s)	245, 512, 968
NciI	CCSGG	1 cut(s)	531
NdeII	GATC	4 cut(s)	45, 73, 889, 1189
NheI	GCTAGC	2 cut(s)	1013, 1196
NlaIII	CATG	4 cut(s)	46, 381, 692, 1132
NlaIV	GGNNCC	4 cut(s)	317, 636, 637, 765
NmuCI	GTSAC	3 cut(s)	1055, 1090, 1222
NspI	RCATGY	2 cut(s)	381, 1132
PagI	TCATGA	1 cut(s)	42
PciI	ACATGT	2 cut(s)	377, 1128
PciSI	GCTCTTC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	661
PfeI	GAWTC	3 cut(s)	212, 401, 540
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	241, 1050, 1154
PleI	GAGTC	4 cut(s)	567, 714, 940, 1087
PpsI	GAGTC	4 cut(s)	567, 714, 940, 1087
PpuMI	RGGWCCY	2 cut(s)	635, 764
PscI	ACATGT	2 cut(s)	377, 1128
Psp124BI	GAGCTC	1 cut(s)	517
Psp5II	RGGWCCY	2 cut(s)	635, 764
Psp6I	CCWGG	1 cut(s)	404
PspFI	CCCAGC	2 cut(s)	862, 866
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	4 cut(s)	317, 636, 637, 765
PspPI	GGNCC	6 cut(s)	173, 408, 425, 635, 764, 881
PspPPI	RGGWCCY	2 cut(s)	635, 764
PstI	CTGCAG	1 cut(s)	1234
PsyI	GACNNNGTC	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	866
RsaI	GTAC	3 cut(s)	136, 317, 498
RsaNI	GTAC	3 cut(s)	135, 316, 497
RseI	CAYNNNNRTG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	517
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	5 cut(s)	60, 590, 669, 782, 1182
SatI	GCNGC	3 cut(s)	240, 1049, 1153
Sau3AI	GATC	4 cut(s)	45, 73, 889, 1189
Sau96I	GGNCC	6 cut(s)	173, 408, 425, 635, 764, 881
SchI	GAGTC	4 cut(s)	568, 715, 940, 1087
ScrFI	CCNGG	2 cut(s)	406, 531
SduI	GDGCHC	4 cut(s)	508, 517, 555, 814
SfaNI	GCATC	2 cut(s)	298, 475
SfcI	CTRYAG	3 cut(s)	52, 489, 1230
SinI	GGWCC	5 cut(s)	173, 408, 425, 635, 764
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	130, 556
SmoI	CTYRAG	2 cut(s)	130, 556
Sse9I	AATT	4 cut(s)	732, 771, 795, 1039
SsiI	CCGC	6 cut(s)	240, 354, 967, 1049, 1061, 1153
SspI	AATATT	2 cut(s)	1186, 1325
SspMI	CTAG	5 cut(s)	110, 312, 984, 1014, 1197
SstI	GAGCTC	1 cut(s)	517
StyD4I	CCNGG	2 cut(s)	404, 529
TaaI	ACNGT	2 cut(s)	1067, 1222
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	388
TaqII	GACCGA	1 cut(s)	190
TasI	AATT	4 cut(s)	732, 771, 795, 1039
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	3 cut(s)	242, 1051, 1155
TfiI	GAWTC	3 cut(s)	212, 401, 540
Tru1I	TTAA	5 cut(s)	60, 590, 669, 782, 1182
Tru9I	TTAA	5 cut(s)	60, 590, 669, 782, 1182
TscAI	CASTG	5 cut(s)	198, 616, 812, 1225, 1239
TseFI	GTSAC	3 cut(s)	1055, 1090, 1222
Tsp45I	GTSAC	3 cut(s)	1055, 1090, 1222
TspGWI	ACGGA	2 cut(s)	536, 559
TspRI	CASTG	5 cut(s)	198, 616, 812, 1225, 1239
Tth111I	GACNNNGTC	1 cut(s)	20
VneI	GTGCAC	1 cut(s)	810
VpaK11BI	GGWCC	5 cut(s)	173, 408, 425, 635, 764
XceI	RCATGY	2 cut(s)	381, 1132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	661
XspI	CTAG	5 cut(s)	110, 312, 984, 1014, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.