Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005065.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Forward (+)

39168 .. 40790

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005065.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtttaacaggaatgacaggaattgtagtggcatgtccccactatgtctcatctcgatccttgttaaagtgacgagatcacacaaatatgttgcaaacaagcctacaaggaaggacgtccctacgagaggatgtagggccacctacacggagatgcttaggcattttgacaaggtcaaacattcaagcacccccatgatcgtccttagtcttgatcctgaaaatgatcctcttcgtctgaaggataatgacgaagatgtgctagaggcagaagtgccttacttgagtacaataggggcattattgtatttagctcaatgcacaggaccagacatctcatttgcagtgaacttagagatgatagattcggacccatcacacaccagaaacgtcgccaacgttggcctacgttctctatccccatcccaaaacggtataagtgttttggaaggttttgctgatgttgggtacctctctgacccacacaaaggtcgctcccaaactggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.66

Weight (kDa)

6.5

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	468
AclI	AACGTT	1 cut(s)	399
AclWI	GGATC	3 cut(s)	52, 209, 221
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	289, 470
AfiI	CCNNNNNNNGG	2 cut(s)	128, 488
AgsI	TTSAA	1 cut(s)	186
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	3 cut(s)	52, 209, 221
AoxI	GGCC	2 cut(s)	138, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp718I	GGTACC	1 cut(s)	468
AspS9I	GGNCC	3 cut(s)	138, 326, 370
AvaII	GGWCC	2 cut(s)	326, 370
BanI	GGYRCC	1 cut(s)	468
BccI	CCATC	2 cut(s)	382, 430
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	326, 370
BmgT120I	GGNCC	3 cut(s)	138, 326, 370
BmiI	GGNNCC	2 cut(s)	372, 470
BmsI	GCATC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 488
Bse1I	ACTGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	137, 422
BseLI	CCNNNNNNNGG	2 cut(s)	128, 488
BseNI	ACTGG	1 cut(s)	508
BshFI	GGCC	2 cut(s)	140, 405
BshNI	GGYRCC	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	22, 104
BslI	CCNNNNNNNGG	2 cut(s)	128, 488
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	22, 104
BsnI	GGCC	2 cut(s)	140, 405
Bsp143I	GATC	5 cut(s)	57, 77, 198, 214, 226
BspANI	GGCC	2 cut(s)	140, 405
BspLI	GGNNCC	2 cut(s)	372, 470
BspPI	GGATC	3 cut(s)	52, 209, 221
BspT107I	GGYRCC	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	508
BssMI	GATC	5 cut(s)	57, 77, 198, 214, 226
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	158, 206, 352
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	137, 422
BstKTI	GATC	5 cut(s)	60, 80, 201, 217, 229
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	5 cut(s)	57, 77, 198, 214, 226
BstNSI	RCATGY	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	140, 405
BtsCI	GGATG	2 cut(s)	137, 422
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	138, 326, 370
Csp6I	GTAC	2 cut(s)	288, 469
CviAII	CATG	2 cut(s)	34, 196
CviJI	RGCY	4 cut(s)	103, 140, 314, 405
CviKI_1	RGCY	4 cut(s)	103, 140, 314, 405
CviQI	GTAC	2 cut(s)	288, 469
DdeI	CTNAG	3 cut(s)	158, 206, 352
DpnI	GATC	5 cut(s)	59, 79, 200, 216, 228
DpnII	GATC	5 cut(s)	57, 77, 198, 214, 226
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	326, 370
Eco57I	CTGAAG	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	37, 199
FaiI	YATR	5 cut(s)	35, 46, 90, 197, 437
FaqI	GGGAC	2 cut(s)	22, 104
FatI	CATG	2 cut(s)	33, 195
FokI	GGATG	2 cut(s)	144, 409
FspBI	CTAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	140, 405
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	37, 199
HinfI	GANTC	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	3 cut(s)	240, 370, 478
Hpy188III	TCNNGA	3 cut(s)	55, 212, 218
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	106, 235, 443
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	4 cut(s)	117, 390, 399, 409
HpyCH4V	TGCA	3 cut(s)	95, 321, 344
HpyF3I	CTNAG	3 cut(s)	158, 206, 352
HpySE526I	ACGT	4 cut(s)	117, 390, 399, 409
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	37, 199
KpnI	GGTACC	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	57, 77, 198, 214, 226
LmnI	GCTCC	1 cut(s)	500
LpnPI	CCDG	6 cut(s)	4, 231, 309, 342, 397, 489
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	4 cut(s)	117, 390, 399, 409
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	59, 79, 200, 216, 228
MboI	GATC	5 cut(s)	57, 77, 198, 214, 226
MboII	GAAGA	2 cut(s)	224, 266
MluCI	AATT	1 cut(s)	22
MnlI	CCTC	4 cut(s)	122, 240, 259, 482
MseI	TTAA	3 cut(s)	6, 66, 508
MslI	CAYNNNNRTG	3 cut(s)	87, 152, 194
NdeII	GATC	5 cut(s)	57, 77, 198, 214, 226
NlaIII	CATG	2 cut(s)	37, 199
NlaIV	GGNNCC	2 cut(s)	372, 470
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	173
Psp1406I	AACGTT	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	372, 470
PspPI	GGNCC	3 cut(s)	138, 326, 370
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	2 cut(s)	289, 470
RsaNI	GTAC	2 cut(s)	288, 469
RseI	CAYNNNNRTG	3 cut(s)	87, 152, 194
SaqAI	TTAA	3 cut(s)	6, 66, 508
Sau3AI	GATC	5 cut(s)	57, 77, 198, 214, 226
Sau96I	GGNCC	3 cut(s)	138, 326, 370
SfaNI	GCATC	1 cut(s)	144
SinI	GGWCC	2 cut(s)	326, 370
SmiMI	CAYNNNNRTG	3 cut(s)	87, 152, 194
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	4 cut(s)	120, 393, 402, 412
TaqI	TCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	22
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	3 cut(s)	6, 66, 508
Tru9I	TTAA	3 cut(s)	6, 66, 508
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	351
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	326, 370
XagI	CCTNNNNNAGG	1 cut(s)	126
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.