Rmu_sc0008923.1_g000001

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008923.1
OG0003281
Physical Location & Seq
Forward (+)
1 .. 2970
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008923.1_g000001.1.cds

Sequence Viewer

Length: 843 bp
atttttgggcttgttcccagggcttctttgtttgagttggaggcagctggtctacaatactgtgaagacgaatgggacaaacagaaaaatcaacataatattgttgatgattcagatctgctgaaatattgtttctcatctgcttatatggtggcactgttgcatgacagtctaggaatccccatggatgagaaaagggttggatttgcaaaccagactggaaatattctccatgattggactctcggtgctttcattgttgaaacaatgctggaaccccttgaatgggaacttgataataatctgggccagattgttggaaatgagtctgtcacgtatttctctgtctttgcatttcttttaatagctgtgtttgctgtattctttgtattgcaatcgcggaaaccacagttaaagactatatacgatttagaaaaaggacgctatattattacacgtgtacgcagtgtcaccacaactctcccgcgacccagcgacctcgtggcatcgcgaccttcaagcacccccatgatcgtccttagtcttgatcctaaaaaggatcctcttcgtttgaaggatgatgacgaagatgtgctagtggcagaagtgccttacttgagtacactaggcgcattattgtacttagctcaatgcacaggaccggacatctcatttgcagtgaacttagagatgatggattcagacccatcacacaccagaaacgcagccaacgcaggcctgcgttctctatccccatcccaaaacgatataagtgctttggaaggttttgctgatgctgggtacctctctggcccacacaaaggtcgctcccaaactggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko05169 map00230 map00240 map05169
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

280

Amino Acids

31.0

Weight (kDa)

4.71

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 801
AccB1I GGYRCC 1 cut(s) 801
AccI GTMKAC 1 cut(s) 52
AccII CGCG 3 cut(s) 400, 487, 511
AciI CCGC 2 cut(s) 400, 485
AclWI GGATC 3 cut(s) 542, 554, 567
AcvI CACGTG 1 cut(s) 458
AfaI GTAC 4 cut(s) 462, 622, 641, 803
AfiI CCNNNNNNNGG 3 cut(s) 285, 286, 821
AflIII ACRYGT 2 cut(s) 455, 457
AgsI TTSAA 4 cut(s) 263, 284, 519, 574
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 3 cut(s) 47, 368, 647
AluI AGCT 3 cut(s) 47, 368, 647
AlwI GGATC 3 cut(s) 542, 554, 567
AoxI GGCC 3 cut(s) 307, 736, 811
ApeKI GCWGC 2 cut(s) 44, 725
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
Asp718I GGTACC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 632
AspS9I GGNCC 3 cut(s) 307, 659, 812
AsuHPI GGTGA 1 cut(s) 463
AvaII GGWCC 1 cut(s) 659
BamHI GGATCC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 801
BauI CACGAG 1 cut(s) 500
BbrPI CACGTG 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 56, 737
BccI CCATC 3 cut(s) 688, 715, 763
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 1 cut(s) 19
BfaI CTAG 3 cut(s) 173, 596, 626
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 45, 726
BlsI GCNGC 2 cut(s) 46, 727
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 659
BmgT120I GGNCC 3 cut(s) 307, 659, 812
BmiI GGNNCC 3 cut(s) 276, 561, 803
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 2 cut(s) 515, 784
BpiI GAAGAC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 637
BsaAI YACGTR 2 cut(s) 336, 458
BsaBI GATNNNNATC 2 cut(s) 114, 300
BsaJI CCNNGG 3 cut(s) 17, 18, 183
BsaWI WCCGGW 1 cut(s) 661
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 286, 821
Bse1I ACTGG 2 cut(s) 223, 841
Bse8I GATNNNNATC 2 cut(s) 114, 300
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 3 cut(s) 17, 18, 183
BseGI GGATG 3 cut(s) 193, 583, 755
BseJI GATNNNNATC 2 cut(s) 114, 300
BseLI CCNNNNNNNGG 3 cut(s) 285, 286, 821
BseNI ACTGG 2 cut(s) 223, 841
BseXI GCAGC 2 cut(s) 56, 737
BseYI CCCAGC 2 cut(s) 491, 797
Bsh1236I CGCG 3 cut(s) 400, 487, 511
BshFI GGCC 3 cut(s) 309, 738, 813
BshNI GGYRCC 1 cut(s) 801
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 3 cut(s) 285, 286, 821
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 3 cut(s) 309, 738, 813
Bsp143I GATC 4 cut(s) 115, 531, 547, 559
Bsp19I CCATGG 1 cut(s) 183
Bsp68I TCGCGA 1 cut(s) 511
BspACI CCGC 2 cut(s) 400, 485
BspANI GGCC 3 cut(s) 309, 738, 813
BspFNI CGCG 3 cut(s) 400, 487, 511
BspLI GGNNCC 3 cut(s) 276, 561, 803
BspPI GGATC 3 cut(s) 542, 554, 567
BspT107I GGYRCC 1 cut(s) 801
BsrI ACTGG 2 cut(s) 223, 841
BssECI CCNNGG 3 cut(s) 17, 18, 183
BssMI GATC 4 cut(s) 115, 531, 547, 559
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 4 cut(s) 62, 159, 170, 411
Bst6I CTCTTC 1 cut(s) 570
BstBAI YACGTR 2 cut(s) 336, 458
BstC8I GCNNGC 2 cut(s) 736, 740
BstDEI CTNAG 3 cut(s) 539, 643, 685
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 3 cut(s) 193, 583, 755
BstFNI CGCG 3 cut(s) 400, 487, 511
BstHHI GCGC 1 cut(s) 632
BstKTI GATC 4 cut(s) 118, 534, 550, 562
BstMBI GATC 4 cut(s) 115, 531, 547, 559
BstMWI GCNNNNNNNGC 2 cut(s) 374, 731
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstUI CGCG 3 cut(s) 400, 487, 511
BstV1I GCAGC 2 cut(s) 56, 737
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 2 cut(s) 115, 559
BstXI CCANNNNNNTGG 1 cut(s) 317
BstYI RGATCY 2 cut(s) 115, 559
BsuRI GGCC 3 cut(s) 309, 738, 813
BtgI CCRYGG 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 492
BtsCI GGATG 3 cut(s) 193, 583, 755
BtsI GCAGTG 2 cut(s) 472, 684
BtsIMutI CAGTG 3 cut(s) 155, 472, 684
BtuMI TCGCGA 1 cut(s) 511
Cac8I GCNNGC 2 cut(s) 736, 740
CfoI GCGC 1 cut(s) 632
Cfr13I GGNCC 3 cut(s) 307, 659, 812
CseI GACGC 1 cut(s) 450
Csp6I GTAC 4 cut(s) 461, 621, 640, 802
CviAII CATG 4 cut(s) 164, 184, 233, 529
CviJI RGCY 9 cut(s) 10, 23, 47, 309, 368, 647, 728, 738, 813
CviKI_1 RGCY 9 cut(s) 10, 23, 47, 309, 368, 647, 728, 738, 813
CviQI GTAC 4 cut(s) 461, 621, 640, 802
DdeI CTNAG 3 cut(s) 539, 643, 685
DpnI GATC 4 cut(s) 117, 533, 549, 561
DpnII GATC 4 cut(s) 115, 531, 547, 559
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 738
Eco47I GGWCC 1 cut(s) 659
Eco72I CACGTG 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 4 cut(s) 167, 187, 236, 532
FaqI GGGAC 1 cut(s) 89
FatI CATG 4 cut(s) 163, 183, 232, 528
FauI CCCGC 1 cut(s) 492
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 45, 726
FokI GGATG 3 cut(s) 200, 590, 742
Fsp4HI GCNGC 2 cut(s) 45, 726
FspBI CTAG 3 cut(s) 173, 596, 626
GlaI GCGC 1 cut(s) 631
GluI GCNGC 2 cut(s) 45, 726
GsaI CCCAGC 2 cut(s) 495, 801
HaeIII GGCC 3 cut(s) 309, 738, 813
HapII CCGG 1 cut(s) 662
HgaI GACGC 1 cut(s) 450
HhaI GCGC 1 cut(s) 632
Hin1II CATG 4 cut(s) 167, 187, 236, 532
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HinfI GANTC 5 cut(s) 110, 177, 241, 326, 698
HpaII CCGG 1 cut(s) 662
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 4 cut(s) 53, 461, 623, 682
Hpy188I TCNGA 2 cut(s) 115, 703
Hpy188III TCNNGA 2 cut(s) 510, 545
Hpy8I GTNNAC 4 cut(s) 53, 461, 623, 682
HpyAV CCTTC 3 cut(s) 525, 568, 776
HpyCH4III ACNGT 4 cut(s) 62, 159, 170, 411
HpyCH4IV ACGT 2 cut(s) 335, 457
HpyCH4V TGCA 6 cut(s) 163, 209, 353, 394, 654, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 731
HpyF3I CTNAG 3 cut(s) 539, 643, 685
HpySE526I ACGT 2 cut(s) 335, 457
Hsp92II CATG 4 cut(s) 167, 187, 236, 532
HspAI GCGC 1 cut(s) 630
KpnI GGTACC 1 cut(s) 805
Kzo9I GATC 4 cut(s) 115, 531, 547, 559
LmnI GCTCC 1 cut(s) 833
Lsp1109I GCAGC 2 cut(s) 56, 737
LweI GCATC 2 cut(s) 515, 784
MaeI CTAG 3 cut(s) 173, 596, 626
MaeII ACGT 2 cut(s) 335, 457
MaeIII GTNAC 2 cut(s) 331, 469
MalI GATC 4 cut(s) 117, 533, 549, 561
MboI GATC 4 cut(s) 115, 531, 547, 559
MboII GAAGA 3 cut(s) 77, 557, 599
MflI RGATCY 2 cut(s) 115, 559
MlyI GAGTC 2 cut(s) 235, 335
MmeI TCCRAC 3 cut(s) 18, 181, 298
MnlI CCTC 4 cut(s) 34, 509, 573, 815
MseI TTAA 3 cut(s) 362, 413, 841
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
MvnI CGCG 3 cut(s) 400, 487, 511
MwoI GCNNNNNNNGC 2 cut(s) 374, 731
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 115, 531, 547, 559
NlaIII CATG 4 cut(s) 167, 187, 236, 532
NlaIV GGNNCC 3 cut(s) 276, 561, 803
NmuCI GTSAC 2 cut(s) 331, 469
NruI TCGCGA 1 cut(s) 511
PasI CCCWGGG 1 cut(s) 18
PceI AGGCCT 1 cut(s) 738
PfeI GAWTC 3 cut(s) 110, 177, 698
PkrI GCNGC 2 cut(s) 46, 727
PleI GAGTC 2 cut(s) 235, 334
PmaCI CACGTG 1 cut(s) 458
PmlI CACGTG 1 cut(s) 458
PpsI GAGTC 2 cut(s) 235, 334
Ppu21I YACGTR 2 cut(s) 336, 458
Psp6I CCWGG 1 cut(s) 17
PspCI CACGTG 1 cut(s) 458
PspFI CCCAGC 2 cut(s) 491, 797
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 3 cut(s) 276, 561, 803
PspPI GGNCC 3 cut(s) 307, 659, 812
PsuI RGATCY 2 cut(s) 115, 559
PvuII CAGCTG 1 cut(s) 47
RruI TCGCGA 1 cut(s) 511
RsaI GTAC 4 cut(s) 462, 622, 641, 803
RsaNI GTAC 4 cut(s) 461, 621, 640, 802
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 3 cut(s) 362, 413, 841
SatI GCNGC 2 cut(s) 45, 726
Sau3AI GATC 4 cut(s) 115, 531, 547, 559
Sau96I GGNCC 3 cut(s) 307, 659, 812
SchI GAGTC 2 cut(s) 235, 335
ScrFI CCNGG 1 cut(s) 19
SfaNI GCATC 2 cut(s) 515, 784
SinI GGWCC 1 cut(s) 659
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
SseBI AGGCCT 1 cut(s) 738
SsiI CCGC 2 cut(s) 400, 485
SspI AATATT 3 cut(s) 100, 128, 226
SspMI CTAG 3 cut(s) 173, 596, 626
StuI AGGCCT 1 cut(s) 738
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 4 cut(s) 62, 159, 170, 411
TaiI ACGT 2 cut(s) 338, 460
TatI WGTACW 2 cut(s) 620, 639
TfiI GAWTC 3 cut(s) 110, 177, 698
Tru1I TTAA 3 cut(s) 362, 413, 841
Tru9I TTAA 3 cut(s) 362, 413, 841
TscAI CASTG 3 cut(s) 162, 472, 684
TseFI GTSAC 2 cut(s) 331, 469
TseI GCWGC 2 cut(s) 44, 725
Tsp45I GTSAC 2 cut(s) 331, 469
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 3 cut(s) 162, 472, 684
VpaK11BI GGWCC 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 3 cut(s) 173, 596, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.