Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001023.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Forward (+)

128349 .. 129965

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001023.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgttcagcaggaaccacaggaattgtcgtggcctgtccccactatgtctcatcttgatcccagttaaagtgacgagatcacacaaatatgctacaaacaagcctgcaaggaaggacgtccctacgagaggacgtagcgcaaccctacacggaggtaggcatggcgccaaagccaaagagagtggcactctggcgttacaggccatggccctagctaggatgcgtgggaggcccgtaggttcgaatgacactttagcacattccaatcttttgatcatcaagactcaaaatcagtctcatgagaatctttcagaagcccttaaagagttaagggaaaccgctgaacacttgaaatccgattttgagatgaaggattatgggagaacacgattatgtctcaggttggaacttgatcttgatcttgaaaatgatcatcttcttttgaaggatgatgacgaagatgtgctagaggtagaagtgccttacttgagtacaataggcgtattattgtacttaactcaatgcacaggaccggacatctcgtttgcaatgaacttagagaagatggattcggacccatcacacaccagaaacgccgccaacgctggcctacgttttctctccccatctcaaaacgatataagtgttttggaaggttttgctgatgttgggtacctctctgacccacacaaaggtcgctcccaaactggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

237

Amino Acids

26.31

Weight (kDa)

7.15

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
Acc65I	GGTACC	1 cut(s)	672
AccB1I	GGYRCC	2 cut(s)	164, 672
AciI	CCGC	2 cut(s)	339, 597
AclWI	GGATC	1 cut(s)	52
AcyI	GRCGYC	2 cut(s)	117, 165
AfaI	GTAC	3 cut(s)	493, 512, 674
AfiI	CCNNNNNNNGG	3 cut(s)	128, 216, 692
AgsI	TTSAA	3 cut(s)	352, 425, 445
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	3 cut(s)	53, 300, 401
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	5 cut(s)	31, 201, 207, 230, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
Asp718I	GGTACC	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	140, 167
AspS9I	GGNCC	4 cut(s)	208, 231, 530, 574
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	530, 574
BanI	GGYRCC	2 cut(s)	164, 672
BccI	CCATC	3 cut(s)	559, 586, 634
BclI	TGATCA	2 cut(s)	273, 430
BcoDI	GTCTC	3 cut(s)	53, 300, 401
BfaI	CTAG	3 cut(s)	212, 216, 467
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
Bme18I	GGWCC	2 cut(s)	530, 574
BmgT120I	GGNCC	4 cut(s)	208, 231, 530, 574
BmiI	GGNNCC	4 cut(s)	14, 166, 576, 674
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	56
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	2 cut(s)	117, 165
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 216, 692
Bse1I	ACTGG	2 cut(s)	62, 712
Bse3DI	GCAATG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	225, 454
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	3 cut(s)	128, 216, 692
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	1 cut(s)	412
BseNI	ACTGG	2 cut(s)	62, 712
BshFI	GGCC	5 cut(s)	33, 203, 209, 232, 609
BshNI	GGYRCC	2 cut(s)	164, 672
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	2 cut(s)	22, 104
BslI	CCNNNNNNNGG	3 cut(s)	128, 216, 692
BsmAI	GTCTC	3 cut(s)	53, 300, 401
BsmFI	GGGAC	2 cut(s)	22, 104
BsnI	GGCC	5 cut(s)	33, 203, 209, 232, 609
Bsp119I	TTCGAA	1 cut(s)	242
Bsp143I	GATC	6 cut(s)	57, 77, 273, 412, 418, 430
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	2 cut(s)	339, 597
BspANI	GGCC	5 cut(s)	33, 203, 209, 232, 609
BspCNI	CTCAG	1 cut(s)	411
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	14, 166, 576, 674
BspPI	GGATC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	242
BspT107I	GGYRCC	2 cut(s)	164, 672
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	62, 712
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	6 cut(s)	57, 77, 273, 412, 418, 430
BssNI	GRCGYC	2 cut(s)	117, 165
BssT1I	CCWWGG	1 cut(s)	204
BstACI	GRCGYC	2 cut(s)	117, 165
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	105, 607
BstDEI	CTNAG	2 cut(s)	398, 556
BstDSI	CCRYGG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	225, 454
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	140, 167
BstKTI	GATC	6 cut(s)	60, 80, 276, 415, 421, 433
BstMAI	GTCTC	3 cut(s)	53, 300, 401
BstMBI	GATC	6 cut(s)	57, 77, 273, 412, 418, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 229, 602
BsuRI	GGCC	5 cut(s)	33, 203, 209, 232, 609
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	225, 454
Cac8I	GCNNGC	2 cut(s)	105, 607
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	2 cut(s)	140, 167
Cfr13I	GGNCC	4 cut(s)	208, 231, 530, 574
Csp6I	GTAC	3 cut(s)	492, 511, 673
CspCI	CAANNNNNGTGG	4 cut(s)	5, 40, 163, 198
CviAII	CATG	3 cut(s)	161, 205, 299
CviJI	RGCY	9 cut(s)	33, 103, 173, 203, 209, 215, 232, 317, 609
CviKI_1	RGCY	9 cut(s)	33, 103, 173, 203, 209, 215, 232, 317, 609
CviQI	GTAC	3 cut(s)	492, 511, 673
DdeI	CTNAG	2 cut(s)	398, 556
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	6 cut(s)	59, 79, 275, 414, 420, 432
DpnII	GATC	6 cut(s)	57, 77, 273, 412, 418, 430
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	530, 574
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	164, 208, 302
FaiI	YATR	8 cut(s)	46, 90, 162, 206, 300, 378, 394, 641
FaqI	GGGAC	2 cut(s)	22, 104
FatI	CATG	3 cut(s)	160, 204, 298
FbaI	TGATCA	2 cut(s)	273, 430
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	2 cut(s)	232, 461
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	3 cut(s)	212, 216, 467
GlaI	GCGC	2 cut(s)	139, 166
GluI	GCNGC	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	5 cut(s)	33, 203, 209, 232, 609
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	2 cut(s)	140, 167
Hin1I	GRCGYC	2 cut(s)	117, 165
Hin1II	CATG	3 cut(s)	164, 208, 302
Hin6I	GCGC	2 cut(s)	138, 165
HinP1I	GCGC	2 cut(s)	138, 165
HinfI	GANTC	3 cut(s)	283, 304, 569
HpaII	CCGG	1 cut(s)	533
Hpy188I	TCNGA	4 cut(s)	313, 358, 574, 682
Hpy188III	TCNNGA	5 cut(s)	55, 280, 299, 416, 422
HpyAV	CCTTC	4 cut(s)	106, 364, 439, 647
HpyCH4IV	ACGT	3 cut(s)	117, 133, 613
HpyCH4V	TGCA	3 cut(s)	107, 525, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 229, 602
HpyF3I	CTNAG	2 cut(s)	398, 556
HpySE526I	ACGT	3 cut(s)	117, 133, 613
Hsp92I	GRCGYC	2 cut(s)	117, 165
Hsp92II	CATG	3 cut(s)	164, 208, 302
HspAI	GCGC	2 cut(s)	138, 165
KasI	GGCGCC	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	676
Ksp22I	TGATCA	2 cut(s)	273, 430
Kzo9I	GATC	6 cut(s)	57, 77, 273, 412, 418, 430
LmnI	GCTCC	1 cut(s)	704
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	3 cut(s)	212, 216, 467
MaeII	ACGT	3 cut(s)	117, 133, 613
MaeIII	GTNAC	2 cut(s)	70, 195
MalI	GATC	6 cut(s)	59, 79, 275, 414, 420, 432
MboI	GATC	6 cut(s)	57, 77, 273, 412, 418, 430
MboII	GAAGA	3 cut(s)	428, 470, 574
MluCI	AATT	1 cut(s)	22
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	5 cut(s)	122, 146, 222, 463, 686
MseI	TTAA	5 cut(s)	66, 321, 329, 515, 712
MslI	CAYNNNNRTG	2 cut(s)	87, 391
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	3 cut(s)	200, 229, 602
NarI	GGCGCC	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	6 cut(s)	57, 77, 273, 412, 418, 430
NlaIII	CATG	3 cut(s)	164, 208, 302
NlaIV	GGNNCC	4 cut(s)	14, 166, 576, 674
NmuCI	GTSAC	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	242
PagI	TCATGA	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	304, 569
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	1 cut(s)	277
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	4 cut(s)	14, 166, 576, 674
PspPI	GGNCC	4 cut(s)	208, 231, 530, 574
RsaI	GTAC	3 cut(s)	493, 512, 674
RsaNI	GTAC	3 cut(s)	492, 511, 673
RseI	CAYNNNNRTG	2 cut(s)	87, 391
SaqAI	TTAA	5 cut(s)	66, 321, 329, 515, 712
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	6 cut(s)	57, 77, 273, 412, 418, 430
Sau96I	GGNCC	4 cut(s)	208, 231, 530, 574
SchI	GAGTC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	210
SfoI	GGCGCC	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	2 cut(s)	530, 574
SmiMI	CAYNNNNRTG	2 cut(s)	87, 391
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	2 cut(s)	339, 597
SspDI	GGCGCC	1 cut(s)	164
SspMI	CTAG	3 cut(s)	212, 216, 467
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	3 cut(s)	120, 136, 616
TaqI	TCGA	1 cut(s)	242
TasI	AATT	1 cut(s)	22
TatI	WGTACW	2 cut(s)	491, 510
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	2 cut(s)	304, 569
Tru1I	TTAA	5 cut(s)	66, 321, 329, 515, 712
Tru9I	TTAA	5 cut(s)	66, 321, 329, 515, 712
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	383, 566
TspGWI	ACGGA	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	530, 574
XagI	CCTNNNNNAGG	1 cut(s)	126
XspI	CTAG	3 cut(s)	212, 216, 467
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.