Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004485.1

Orthogroup ID

OG0003281

Physical Location & Seq

Genomic Coordinates Forward (+)

113941 .. 115516

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004485.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgtttcgtacttatgcatattttgtgtatgtcattcatgtgcctattgcaccaccacaacgcactaagatgcgtcttcactgtcgaatgagcaaatacattggatttaagactccaacaatcgtccaccacttaatacccttgctaggagatctcttaaccgcatgccttgcggcttgtcactttgatgagacagtcttcctgtcgttagggggagataagaacacagatgttcaacaggaacgacagaattgtcgtggtcaagccttcaagcaccccatgatcgtccatagtcttgatcctgaaaaggttcctcttcgtctaaaggatgatgacgaagatgtgatagaggcaaaagtgccctatttaagtataataggcacattattgtacttagatcaatgcacaagatcaaacatctcatatgctatgaacttgttagctagagataatggattcggacccatcacaccccaggaacgcctccaatactggcatgcgtcctctccccatcccaaaacgatattagtgatttggaaggttttgctgatgctgggtacatctctgacccacacgaaggtcgtcccaaattggttcaccatgggtaagaccgcgatatcttggaggtttatagacaagaccatagtcgctatatctttaaaccatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

223

Amino Acids

25.47

Weight (kDa)

9.08

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003281)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g17420
rosa_chinensis	RchiOBHm_Chr4g0399091 RchiOBHm_Chr4g0421941 RchiOBHm_Chr5g0007901
rosa_multiflora	Rmu_sc0000335.1_g000036 Rmu_sc0000356.1_g000003 Rmu_sc0000805.1_g000052 Rmu_sc0000821.1_g000003 Rmu_sc0000929.1_g000005 Rmu_sc0001023.1_g000028 Rmu_sc0001231.1_g000008 Rmu_sc0001575.1_g000023 Rmu_sc0001824.1_g000010 Rmu_sc0001844.1_g000026 Rmu_sc0002501.1_g000014 Rmu_sc0002607.1_g000033 Rmu_sc0002741.1_g000022 Rmu_sc0003002.1_g000053 Rmu_sc0003221.1_g000088 Rmu_sc0004485.1_g000019 Rmu_sc0004927.1_g000032 Rmu_sc0005065.1_g000012 Rmu_sc0005433.1_g000006 Rmu_sc0005645.1_g000014 Rmu_sc0007038.1_g000008 Rmu_sc0008582.1_g000003 Rmu_sc0008923.1_g000001 Rmu_sc0009255.1_g000009 Rmu_sc0013071.1_g000002 Rmu_sc0015943.1_g000001 Rmu_sc0015988.1_g000002 Rmu_sc0027076.1_g000002 Rmu_sc0027506.1_g000005 Rmu_ssc0000044.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229100
rosa_rugosa	Rorug06G0164600 Rorug06G0164600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	614
AciI	CCGC	3 cut(s)	162, 173, 612
AclWI	GGATC	1 cut(s)	293
AfaI	GTAC	3 cut(s)	10, 392, 559
AfiI	CCNNNNNNNGG	2 cut(s)	146, 577
AgsI	TTSAA	2 cut(s)	236, 271
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	68, 190
BccI	CCATC	2 cut(s)	473, 519
BciT130I	CCWGG	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	146, 444
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	2 cut(s)	312, 463
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	60, 540
BoxI	GACNNNNGTC	1 cut(s)	644
BpiI	GAAGAC	2 cut(s)	68, 190
BsaJI	CCNNGG	2 cut(s)	474, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 577
Bse1I	ACTGG	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	2 cut(s)	474, 600
BseGI	GGATG	2 cut(s)	334, 511
BseLI	CCNNNNNNNGG	2 cut(s)	146, 577
BseNI	ACTGG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	363
BseYI	CCCAGC	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	146, 577
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	5 cut(s)	151, 282, 298, 397, 410
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	3 cut(s)	162, 173, 612
BspFNI	CGCG	1 cut(s)	614
BspLI	GGNNCC	2 cut(s)	312, 463
BspPI	GGATC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	474, 600
BssMI	GATC	5 cut(s)	151, 282, 298, 397, 410
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	83, 196
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	166, 498
BstDEI	CTNAG	2 cut(s)	66, 394
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	334, 511
BstFNI	CGCG	1 cut(s)	614
BstKTI	GATC	5 cut(s)	154, 285, 301, 400, 413
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	5 cut(s)	151, 282, 298, 397, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	2 cut(s)	168, 500
BstPAI	GACNNNNGTC	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	1 cut(s)	614
BstV2I	GAAGAC	2 cut(s)	68, 190
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	334, 511
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	166, 498
Cfr13I	GGNCC	1 cut(s)	461
CseI	GACGC	2 cut(s)	62, 489
Csp6I	GTAC	3 cut(s)	9, 391, 558
CviAII	CATG	6 cut(s)	38, 165, 280, 497, 601, 665
CviJI	RGCY	3 cut(s)	176, 266, 443
CviKI_1	RGCY	3 cut(s)	176, 266, 443
CviQI	GTAC	3 cut(s)	9, 391, 558
DdeI	CTNAG	2 cut(s)	66, 394
DpnI	GATC	5 cut(s)	153, 284, 300, 399, 412
DpnII	GATC	5 cut(s)	151, 282, 298, 397, 410
DraI	TTTAAA	1 cut(s)	660
DrdI	GACNNNNNNGTC	1 cut(s)	252
DseDI	GACNNNNNNGTC	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	600
Eco32I	GATATC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	600
EcoT22I	ATGCAT	2 cut(s)	19, 670
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	6 cut(s)	41, 168, 283, 500, 604, 668
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	6 cut(s)	37, 164, 279, 496, 600, 664
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	2 cut(s)	341, 498
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	2 cut(s)	146, 444
GluI	GCNGC	1 cut(s)	174
GsaI	CCCAGC	1 cut(s)	557
HgaI	GACGC	2 cut(s)	62, 489
Hin1II	CATG	6 cut(s)	41, 168, 283, 500, 604, 668
HinfI	GANTC	2 cut(s)	112, 456
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	2 cut(s)	127, 597
Hpy188I	TCNGA	2 cut(s)	461, 567
Hpy188III	TCNNGA	2 cut(s)	296, 302
Hpy8I	GTNNAC	2 cut(s)	127, 597
HpyAV	CCTTC	3 cut(s)	277, 532, 571
HpyCH4III	ACNGT	2 cut(s)	83, 196
HpyCH4V	TGCA	4 cut(s)	17, 50, 405, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	66, 394
Hsp92II	CATG	6 cut(s)	41, 168, 283, 500, 604, 668
Kzo9I	GATC	5 cut(s)	151, 282, 298, 397, 410
LpnPI	CCDG	7 cut(s)	215, 224, 315, 461, 478, 488, 539
LweI	GCATC	2 cut(s)	60, 540
MaeI	CTAG	2 cut(s)	146, 444
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	5 cut(s)	153, 284, 300, 399, 412
MboI	GATC	5 cut(s)	151, 282, 298, 397, 410
MboII	GAAGA	4 cut(s)	68, 190, 308, 350
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	250, 589
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	5 cut(s)	324, 343, 494, 514, 618
Mph1103I	ATGCAT	2 cut(s)	19, 670
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	5 cut(s)	108, 134, 158, 368, 659
MslI	CAYNNNNRTG	3 cut(s)	38, 68, 186
MspR9I	CCNGG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	476
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	600
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	5 cut(s)	151, 282, 298, 397, 410
NlaIII	CATG	6 cut(s)	41, 168, 283, 500, 604, 668
NlaIV	GGNNCC	2 cut(s)	312, 463
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	2 cut(s)	19, 670
NspI	RCATGY	2 cut(s)	168, 500
PaeI	GCATGC	2 cut(s)	168, 500
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	312, 463
PspPI	GGNCC	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	3 cut(s)	10, 392, 559
RsaNI	GTAC	3 cut(s)	9, 391, 558
RseI	CAYNNNNRTG	3 cut(s)	38, 68, 186
SaqAI	TTAA	5 cut(s)	108, 134, 158, 368, 659
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	5 cut(s)	151, 282, 298, 397, 410
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	5 cut(s)	312, 445, 543, 582, 629
SfaNI	GCATC	2 cut(s)	60, 540
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	3 cut(s)	38, 68, 186
SphI	GCATGC	2 cut(s)	168, 500
Sse9I	AATT	2 cut(s)	250, 589
SsiI	CCGC	3 cut(s)	162, 173, 612
SspMI	CTAG	2 cut(s)	146, 444
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	83, 196
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	250, 589
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	5 cut(s)	108, 134, 158, 368, 659
Tru9I	TTAA	5 cut(s)	108, 134, 158, 368, 659
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	26, 446
TspRI	CASTG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	461
XceI	RCATGY	2 cut(s)	168, 500
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	2 cut(s)	146, 444
Zsp2I	ATGCAT	2 cut(s)	19, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.