RchiOBHm_Chr4g0421941

Belongs to the formin-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003281
Physical Location & Seq
Forward (+)
47628198 .. 47628579
382 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39155

Sequence Viewer

Length: 321 bp
ATGAAGAATGTACCTTATGCATCGGCAGTTGGATGCTTAATGTATGCTATGGTGTGTACTAGACCCAATATTGCTCATGCAGTTGGAGTTGTGAGTAGGTACACGAGTAATCCAGGAAAGCAACATTGGGAGGCTGTGAAGTGGATCATGAGAGAGGTAGTGCTGAACTACAAGGATATGTTGATGCAGACTTGGCAGGAGATCATGATACTTGTCGGAGTACTACTGGTTATGTGTATACTGTGGGTGGTGCTGCCGTATCTTGGGTCTCAAATTTGCAAGGGCAAGTGGCCCTGTCTACAACGGAGTCCGAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0008092
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FH2

Protein Analysis

106

Amino Acids

12.1

Weight (kDa)

9.27

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 238, 298
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 4 cut(s) 12, 58, 101, 222
AfiI CCNNNNNNNGG 1 cut(s) 263
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 291
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BauI CACGAG 1 cut(s) 103
BbvI GCAGC 1 cut(s) 240
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
BmcAI AGTACT 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 3 cut(s) 23, 29, 174
BsaI GGTCTC 1 cut(s) 273
BsaXI ACNNNNNCTCC 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 240
BshFI GGCC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 1 cut(s) 292
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 144, 201
BspANI GGCC 1 cut(s) 292
BspHI TCATGA 2 cut(s) 147, 204
BspPI GGATC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 231
BssMI GATC 2 cut(s) 144, 201
BssNAI GTATAC 1 cut(s) 239
BssSI CACGAG 1 cut(s) 103
Bst1107I GTATAC 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 243
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 2 cut(s) 147, 204
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 144, 201
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 240
BstZ17I GTATAC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 38
CciI TCATGA 2 cut(s) 147, 204
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 4 cut(s) 11, 57, 100, 221
CviAII CATG 3 cut(s) 77, 148, 205
CviJI RGCY 2 cut(s) 134, 292
CviKI_1 RGCY 2 cut(s) 134, 292
CviQI GTAC 4 cut(s) 11, 57, 100, 221
DpnI GATC 2 cut(s) 146, 203
DpnII GATC 2 cut(s) 144, 201
Eco31I GGTCTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 22
FaeI CATG 3 cut(s) 80, 151, 208
FatI CATG 3 cut(s) 76, 147, 204
FblI GTMKAC 2 cut(s) 238, 298
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 254
HaeIII GGCC 1 cut(s) 292
Hin1II CATG 3 cut(s) 80, 151, 208
HinfI GANTC 1 cut(s) 307
Hpy166II GTNNAC 4 cut(s) 57, 102, 239, 299
Hpy188I TCNGA 2 cut(s) 218, 312
Hpy188III TCNNGA 2 cut(s) 148, 205
Hpy8I GTNNAC 4 cut(s) 57, 102, 239, 299
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 20, 80, 187, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 3 cut(s) 80, 151, 208
Kzo9I GATC 2 cut(s) 144, 201
LpnPI CCDG 5 cut(s) 99, 126, 182, 212, 307
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 3 cut(s) 23, 29, 174
MaeI CTAG 1 cut(s) 60
MalI GATC 2 cut(s) 146, 203
MboI GATC 2 cut(s) 144, 201
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 273
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 3 cut(s) 10, 64, 196
MnlI CCTC 2 cut(s) 124, 148
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 2 cut(s) 144, 201
NlaIII CATG 3 cut(s) 80, 151, 208
NsiI ATGCAT 1 cut(s) 22
PagI TCATGA 2 cut(s) 147, 204
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspPI GGNCC 1 cut(s) 291
RsaI GTAC 4 cut(s) 12, 58, 101, 222
RsaNI GTAC 4 cut(s) 11, 57, 100, 221
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 2 cut(s) 144, 201
Sau96I GGNCC 1 cut(s) 291
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 114
SetI ASST 3 cut(s) 16, 101, 159
SfaNI GCATC 3 cut(s) 23, 29, 174
Sse9I AATT 1 cut(s) 273
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 243
TasI AATT 1 cut(s) 273
TatI WGTACW 2 cut(s) 56, 220
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 319
XapI RAATTY 1 cut(s) 273
XmiI GTMKAC 2 cut(s) 238, 298
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.