Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001791

Physical Location & Seq

Genomic Coordinates Reverse (-)

18073224 .. 18074005

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGGAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGCGTCAGGTGTGGCCGTCGCAGCTTCCATCTTCAGAAGAGTAGGTGCTCTGCTTGTGCCTTTCCTGCTGCCCGCAAGAGGAAGTACAACTGGAGTGAAAAGGCGATCCGAAGGAAGACCACTGGAACTGGAAGGATGAGGTATCTTCGCAATGTGCCACGCAGATTCAAGAGCGGCTTCAGAGAAGGTACCGAAGCTGCACCAAGGAAGAAGGGAGCAGCTGCAACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L37e

Protein Analysis

96

Amino Acids

10.76

Weight (kDa)

11.86

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	3.4e-27	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15250 AT1G15250 AT1G52300 AT3G16080 AT3G16080
fragaria_vesca	FvH4_2g36210 FvH4_6g31490
malus_domestica	MD08G1119100.v1.1 MD09G1210700.v1.1 MD15G1098400.v1.1 MD17G1193600.v1.1
prunus_persica	Prupe.1G453300_v2.0.a1 Prupe.3G069000_v2.0.a1 Prupe.7G231700_v2.0.a1
pyrus_communis	pycom08g09950 pycom09g12820 pycom15g09020 pycom17g19960
rosa_chinensis	RchiOBHm_Chr0c09g0498131 RchiOBHm_Chr2g0090341 RchiOBHm_Chr2g0138351 RchiOBHm_Chr3g0483621 RchiOBHm_Chr3g0495931 RchiOBHm_Chr5g0044271 RchiOBHm_Chr6g0305681 RchiOBHm_Chr7g0217481
rosa_multiflora	Rmu_sc0002475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106310 Rroxscaffold_7G00162450
rosa_rugosa	Rorug02G0150500 Rorug02G0150600 Rorug02G0169500 Rorug02G0351700 Rorug03G0288100 Rorug05G0567600 Rorug06G0342900 Rorug07G0234700
rosa_samantha	Rh2AG399800 Rh2CG386100 Rh2DG419600 Rh6AG454600 Rh6BG446900 Rh6CG468500 Rh6DG455100
rosa_wichuraiana	Rw2G032530 Rw3G028400 Rw6G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	2 cut(s)	127, 228
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	71, 217
AfaI	GTAC	2 cut(s)	140, 244
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	3 cut(s)	78, 251, 275
AluI	AGCT	3 cut(s)	78, 251, 275
Alw21I	GWGCWC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	5 cut(s)	75, 122, 251, 272, 275
Asp718I	GGTACC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	5 cut(s)	87, 109, 238, 262, 284
BccI	CCATC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	54
BisI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
BlsI	GCNGC	6 cut(s)	77, 124, 230, 253, 274, 277
BmiI	GGNNCC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	3 cut(s)	149, 181, 187
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	3 cut(s)	149, 181, 187
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	5 cut(s)	87, 109, 238, 262, 284
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	2 cut(s)	127, 228
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	149, 181, 187
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
BstV1I	GCAGC	5 cut(s)	87, 109, 238, 262, 284
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	127
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	139, 243
CviJI	RGCY	5 cut(s)	69, 78, 231, 251, 275
CviKI_1	RGCY	5 cut(s)	69, 78, 231, 251, 275
CviQI	GTAC	2 cut(s)	139, 243
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	257
Eco57I	CTGAAG	2 cut(s)	71, 217
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
GluI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	219
Hpy188I	TCNGA	3 cut(s)	90, 164, 236
Hpy188III	TCNNGA	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	159, 180, 233, 259
HpyCH4V	TGCA	2 cut(s)	254, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	46, 130, 132, 162, 168
Lsp1109I	GCAGC	5 cut(s)	87, 109, 238, 262, 284
MalI	GATC	1 cut(s)	161
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	1 cut(s)	159
MboII	GAAGA	5 cut(s)	77, 103, 181, 191, 274
MhlI	GDGCHC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	24, 27, 62, 126, 186
MseI	TTAA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
NdeII	GATC	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	77, 124, 230, 253, 274, 277
PspN4I	GGNNCC	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	140, 244
RsaNI	GTAC	2 cut(s)	139, 243
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	6 cut(s)	76, 123, 229, 252, 273, 276
Sau3AI	GATC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	7 cut(s)	65, 80, 101, 197, 244, 253, 277
SsiI	CCGC	2 cut(s)	127, 228
StyI	CCWWGG	1 cut(s)	257
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	5 cut(s)	75, 122, 251, 272, 275
TspRI	CASTG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.