Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

19215127 .. 19216128

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCATCCCAGGATCAGAGACAGAGCTACAGAGCTCGTGAGGCCAAGGGCCAAGTTCAGGAGAAAACTAACCAGGTGATGGGCACAGTGGGGAACAAGGCACAAGGAGAACGGAACAAGGCCTATGACACAACCCAAGCAACAAGGGACAAGACATACAAGACAGCCCAGTCAGCCAAGGACAGAACACAGGCCTCTATGAACCAGGTGAAAGACAAGACCGCTGAGAAGGCGGAGCAAGCAAAAGAGAAGGCCTGGGAGACCAAGGAGACGGCCAAGCAGAAAGCAGAAGAGGCAGCCCAGAAGACCAAAGAGACCGCCCAGTACGGCAATGAGAAAGCCTCAGGGACCATGCAGCAGACTGGAGAGCAGATGAAGCACATGGCGCAAGGTGCTGCTGATGCTGTGAAAGGCACTTTTGGGTTGGGCAAGAATGATGATAAGGAAGAGGACACTGGTGTTTATTATAACAAGGACTCCACCACCGGCACTACCGGTGGCACCACCAAAAGATCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

174

Amino Acids

19.04

Weight (kDa)

9.28

Isoelectric Point (pI)

24.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
AasI	GACNNNNNNGTC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	79
AciI	CCGC	3 cut(s)	222, 233, 318
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	273
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	58, 79
AgeI	ACCGGT	1 cut(s)	494
AjnI	CCWGG	4 cut(s)	9, 72, 204, 254
AluBI	AGCT	2 cut(s)	27, 35
AluI	AGCT	2 cut(s)	27, 35
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	4 cut(s)	13, 254, 263, 308
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	6 cut(s)	42, 49, 120, 192, 252, 273
ApeKI	GCWGC	3 cut(s)	296, 355, 395
AsiGI	ACCGGT	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	49, 348
AsuHPI	GGTGA	2 cut(s)	88, 220
AvaII	GGWCC	1 cut(s)	348
AxyI	CCTNAGG	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	308, 367, 382
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	2 cut(s)	288, 343
BciT130I	CCWGG	4 cut(s)	11, 74, 206, 256
BcoDI	GTCTC	4 cut(s)	13, 254, 263, 308
BfmI	CTRYAG	1 cut(s)	28
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	3 cut(s)	297, 356, 396
BlsI	GCNGC	3 cut(s)	298, 357, 397
Bme1390I	CCNGG	4 cut(s)	11, 74, 206, 256
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	2 cut(s)	49, 348
BmiI	GGNNCC	2 cut(s)	349, 502
BmrFI	CCNGG	4 cut(s)	11, 74, 206, 256
BmrI	ACTGGG	2 cut(s)	163, 316
BmsI	GCATC	2 cut(s)	14, 391
BmuI	ACTGGG	2 cut(s)	163, 316
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpmI	CTGGAG	1 cut(s)	384
BsaI	GGTCTC	2 cut(s)	254, 308
BsaJI	CCNNGG	5 cut(s)	9, 45, 177, 255, 264
BsaWI	WCCGGW	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 79
Bse118I	RCCGGY	2 cut(s)	485, 494
Bse1I	ACTGG	4 cut(s)	169, 322, 367, 460
Bse21I	CCTNAGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	4 cut(s)	11, 74, 206, 256
BseDI	CCNNGG	5 cut(s)	9, 45, 177, 255, 264
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	58, 79
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	216, 357
BseNI	ACTGG	4 cut(s)	169, 322, 367, 460
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	308, 367, 382
BshFI	GGCC	6 cut(s)	44, 51, 122, 194, 254, 275
BshNI	GGYRCC	1 cut(s)	500
BshTI	ACCGGT	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	486, 495
BslFI	GGGAC	2 cut(s)	161, 361
BslI	CCNNNNNNNGG	2 cut(s)	58, 79
BsmAI	GTCTC	4 cut(s)	13, 254, 263, 308
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	2 cut(s)	161, 361
BsnI	GGCC	6 cut(s)	44, 51, 122, 194, 254, 275
Bso31I	GGTCTC	2 cut(s)	254, 308
Bsp1286I	GDGCHC	2 cut(s)	37, 86
Bsp143I	GATC	2 cut(s)	13, 512
BspACI	CCGC	3 cut(s)	222, 233, 318
BspANI	GGCC	6 cut(s)	44, 51, 122, 194, 254, 275
BspCNI	CTCAG	2 cut(s)	217, 356
BspLI	GGNNCC	2 cut(s)	349, 502
BspPI	GGATC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	500
BspTNI	GGTCTC	2 cut(s)	254, 308
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	2 cut(s)	485, 494
BsrI	ACTGG	4 cut(s)	169, 322, 367, 460
BssAI	RCCGGY	2 cut(s)	485, 494
BssECI	CCNNGG	5 cut(s)	9, 45, 177, 255, 264
BssMI	GATC	2 cut(s)	13, 512
BssSI	CACGAG	1 cut(s)	36
BssT1I	CCWWGG	3 cut(s)	45, 177, 264
Bst2BI	CACGAG	1 cut(s)	36
Bst2UI	CCWGG	4 cut(s)	11, 74, 206, 256
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	285, 441
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	225, 343
BstF5I	GGATG	1 cut(s)	5
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	16, 515
BstMAI	GTCTC	4 cut(s)	13, 254, 263, 308
BstMBI	GATC	2 cut(s)	13, 512
BstMWI	GCNNNNNNNGC	9 cut(s)	41, 173, 230, 239, 293, 376, 385, 392, 401
BstNI	CCWGG	4 cut(s)	11, 74, 206, 256
BstSCI	CCNGG	4 cut(s)	9, 72, 204, 254
BstSFI	CTRYAG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	308, 367, 382
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
Bsu36I	CCTNAGG	1 cut(s)	343
BsuRI	GGCC	6 cut(s)	44, 51, 122, 194, 254, 275
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	93, 453
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	388
Cfr10I	RCCGGY	2 cut(s)	485, 494
Cfr13I	GGNCC	2 cut(s)	49, 348
CsiI	ACCWGGT	2 cut(s)	72, 204
Csp6I	GTAC	1 cut(s)	325
CspAI	ACCGGT	1 cut(s)	494
CviAII	CATG	2 cut(s)	352, 382
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	225, 343
DpnI	GATC	2 cut(s)	15, 514
DpnII	GATC	2 cut(s)	13, 512
DrdI	GACNNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	285, 441
EarI	CTCTTC	2 cut(s)	285, 441
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	3 cut(s)	45, 177, 264
Eco147I	AGGCCT	3 cut(s)	122, 194, 254
Eco24I	GRGCYC	1 cut(s)	37
Eco31I	GGTCTC	2 cut(s)	254, 308
Eco47I	GGWCC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	35
EcoRII	CCWGG	4 cut(s)	9, 72, 204, 254
EcoT14I	CCWWGG	3 cut(s)	45, 177, 264
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	3 cut(s)	45, 177, 264
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	2 cut(s)	355, 385
FaiI	YATR	6 cut(s)	126, 157, 200, 353, 383, 468
FaqI	GGGAC	2 cut(s)	161, 361
FatI	CATG	2 cut(s)	351, 381
Fnu4HI	GCNGC	3 cut(s)	297, 356, 396
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	3 cut(s)	297, 356, 396
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	3 cut(s)	297, 356, 396
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	6 cut(s)	44, 51, 122, 194, 254, 275
HapII	CCGG	2 cut(s)	486, 495
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	355, 385
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	486, 495
HphI	GGTGA	2 cut(s)	88, 220
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	38, 59
HpyAV	CCTTC	2 cut(s)	223, 244
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	9 cut(s)	41, 173, 230, 239, 293, 376, 385, 392, 401
HpyF3I	CTNAG	2 cut(s)	225, 343
Hsp92II	CATG	2 cut(s)	355, 385
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	13, 512
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	3 cut(s)	308, 367, 382
LweI	GCATC	2 cut(s)	14, 391
MabI	ACCWGGT	2 cut(s)	72, 204
MalI	GATC	2 cut(s)	15, 514
MboI	GATC	2 cut(s)	13, 512
MboII	GAAGA	3 cut(s)	302, 316, 458
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	37, 86
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	5 cut(s)	34, 205, 286, 352, 442
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	2 cut(s)	486, 495
MspR9I	CCNGG	4 cut(s)	11, 74, 206, 256
MvaI	CCWGG	4 cut(s)	11, 74, 206, 256
MwoI	GCNNNNNNNGC	9 cut(s)	41, 173, 230, 239, 293, 376, 385, 392, 401
NdeII	GATC	2 cut(s)	13, 512
NlaIII	CATG	2 cut(s)	355, 385
NlaIV	GGNNCC	2 cut(s)	349, 502
PceI	AGGCCT	3 cut(s)	122, 194, 254
PflMI	CCANNNNNTGG	1 cut(s)	79
PinAI	ACCGGT	1 cut(s)	494
PkrI	GCNGC	3 cut(s)	298, 357, 397
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	37
Psp6I	CCWGG	4 cut(s)	9, 72, 204, 254
PspGI	CCWGG	4 cut(s)	9, 72, 204, 254
PspN4I	GGNNCC	2 cut(s)	349, 502
PspPI	GGNCC	2 cut(s)	49, 348
PsuI	RGATCY	1 cut(s)	512
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	37
SatI	GCNGC	3 cut(s)	297, 356, 396
Sau3AI	GATC	2 cut(s)	13, 512
Sau96I	GGNCC	2 cut(s)	49, 348
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	4 cut(s)	11, 74, 206, 256
SduI	GDGCHC	2 cut(s)	37, 86
SetI	ASST	5 cut(s)	29, 37, 78, 210, 394
SexAI	ACCWGGT	2 cut(s)	72, 204
SfaNI	GCATC	2 cut(s)	14, 391
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	348
SseBI	AGGCCT	3 cut(s)	122, 194, 254
SsiI	CCGC	3 cut(s)	222, 233, 318
SstI	GAGCTC	1 cut(s)	37
StuI	AGGCCT	3 cut(s)	122, 194, 254
StyD4I	CCNGG	4 cut(s)	9, 72, 204, 254
StyI	CCWWGG	3 cut(s)	45, 177, 264
TaaI	ACNGT	1 cut(s)	88
TscAI	CASTG	2 cut(s)	93, 460
TseI	GCWGC	3 cut(s)	296, 355, 395
TspDTI	ATGAA	2 cut(s)	215, 389
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	2 cut(s)	93, 460
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.