pycom17g22630

Cinnamoyl-CoA reductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
21016075 .. 21020254
4180 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1020 bp
ATGCCTGCCGTTAGCTCGTCAGTTTCTGGCCACGGCCAAACTATTTGTGTCACCGGAGCTGGAGGCTTCATTGCTTCTTGGATGGTGAAGCTATTGCTCGAAAGAGGCTACACTGTTAGAGGAACCTTGAGAAACCCAGATGACCCAAAGAATGCTCATTTGAGAGAGCTTGAAGGAGCTGCAGAGAGACTAACTTTGTGCAGAGCTGATCTCCTTGATTATGAGAGCCTCAAAGAAGCTATTAACGGCTGTGATGGAGTTTTTCACACAGCATCACCTGTCACGGATGATCCAGAACAAATGGTGGAGCCCGCAGTGAACGGAACCAAGAATGTGATTCAGGCAGCGGCGGAAGCCAAGGTGAGACGGGTGGTTTTCACGTCGTCAATCGGTGCGGTGTACATGGACCCCACCAGGGGTCCTGATGTGGTGGTTGATGAGTCGTGCTGGATCGATCTTGAATTTTGCAAGAACACCAAGAACTGGTACTGCTATGGGAAAGCAGTGGCAGAGCAGGCAGCATGGGCTGAGGCCAAAGAGAAAGGGGTGGACTTGGTGGTGGTGAACCCAGTGTTGGTGCTAGGACCACTTTTGCAACCAACTGTCAACGCTAGCATCATTCACATCCTCAAGTACCTGACAGGCTCAACCCAGACATATGCTAATTCAGTTCAGGCCTATGTGCATGTTAGGGACGTCGCACTGGCTCACATTCTGGTCTATGAGACACCATCGGCCTCTGGCAGATATCTTTGTGCTGAGAGTGTGCTCCACCGGGGTGACGTGGTGGAAATCCTGGCAAAATTCTTCCCGGAATACCCTATTCCCAACAAGTGTAAAGATAATGGAAAACCCAGGGCAGAACCATACAAGTTCACAAACCAGAAGCTACGAGACTTAGGGTTGGAGTTCACCCCAGTCAAACATACCCTGTATGAAACTGTCAAGAGCTTGCAGGAGAAGGGCCACCTTCCAGTCCCTACAAAACAAGAACAAGATTCCATTAAAATTCAATCTTAA

Protein Analysis

340

Amino Acids

37.25

Weight (kDa)

6.16

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 13 - 132 2.4e-14 NmrA-like family
KR PF08659 14 - 137 2e-06 KR domain
Epimerase PF01370 15 - 247 6.9e-30 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 15 - 135 6.8e-08 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 17 - 240 1.6e-22 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 17 - 264 3.9e-14 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 17 - 199 1.1e-11 Male sterility protein
NAD_binding_10 PF13460 19 - 134 5.3e-19 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 699
AccB7I CCANNNNNTGG 1 cut(s) 483
AciI CCGC 4 cut(s) 312, 347, 350, 395
AclWI GGATC 2 cut(s) 284, 458
AcoI YGGCCR 2 cut(s) 28, 34
AcsI RAATTY 3 cut(s) 461, 803, 1008
AcyI GRCGYC 1 cut(s) 696
AfaI GTAC 3 cut(s) 401, 488, 635
AfiI CCNNNNNNNGG 4 cut(s) 415, 416, 483, 574
AgsI TTSAA 3 cut(s) 173, 461, 1013
AjiI CACGTC 2 cut(s) 381, 784
AjnI CCWGG 3 cut(s) 413, 795, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AleI CACNNNNGTG 1 cut(s) 777
AluBI AGCT 9 cut(s) 15, 59, 91, 169, 179, 206, 239, 889, 951
AluI AGCT 9 cut(s) 15, 59, 91, 169, 179, 206, 239, 889, 951
Alw21I GWGCWC 1 cut(s) 771
Alw26I GTCTC 4 cut(s) 181, 358, 719, 888
AlwI GGATC 2 cut(s) 284, 458
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 6 cut(s) 28, 34, 531, 675, 735, 964
ApeKI GCWGC 3 cut(s) 179, 344, 518
ApoI RAATTY 3 cut(s) 461, 803, 1008
AspS9I GGNCC 4 cut(s) 406, 419, 584, 964
AsuC2I CCSGG 2 cut(s) 776, 812
AsuHPI GGTGA 7 cut(s) 43, 97, 267, 373, 574, 791, 904
AsuNHI GCTAGC 1 cut(s) 611
AvaII GGWCC 3 cut(s) 406, 419, 584
BalI TGGCCA 1 cut(s) 30
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 771
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 3 cut(s) 166, 356, 530
BccI CCATC 3 cut(s) 76, 248, 739
BceAI ACGGC 2 cut(s) 49, 262
BciT130I CCWGG 3 cut(s) 415, 797, 856
BcnI CCSGG 2 cut(s) 776, 812
BcoDI GTCTC 4 cut(s) 181, 358, 719, 888
BfaI CTAG 2 cut(s) 581, 612
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 4 cut(s) 180, 345, 348, 519
BlsI GCNGC 4 cut(s) 181, 346, 349, 520
Bme1390I CCNGG 5 cut(s) 415, 776, 797, 812, 856
Bme18I GGWCC 3 cut(s) 406, 419, 584
BmgBI CACGTC 2 cut(s) 381, 784
BmgT120I GGNCC 4 cut(s) 406, 419, 584, 964
BmiI GGNNCC 5 cut(s) 124, 309, 325, 408, 420
BmrFI CCNGG 5 cut(s) 415, 776, 797, 812, 856
BmrI ACTGGG 2 cut(s) 563, 911
BmsI GCATC 2 cut(s) 281, 624
BmtI GCTAGC 1 cut(s) 615
BmuI ACTGGG 2 cut(s) 563, 911
BplI GAGNNNNNCTC 2 cut(s) 195, 227
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 148, 614
BpuMI CCSGG 2 cut(s) 776, 812
Bsa29I ATCGAT 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 696
BsaJI CCNNGG 6 cut(s) 31, 357, 414, 775, 854, 855
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 4 cut(s) 415, 416, 483, 574
Bse1I ACTGG 5 cut(s) 488, 569, 708, 917, 974
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 3 cut(s) 415, 797, 856
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 6 cut(s) 31, 357, 414, 775, 854, 855
BseGI GGATG 3 cut(s) 87, 292, 624
BseLI CCNNNNNNNGG 4 cut(s) 415, 416, 483, 574
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 519, 750
BseNI ACTGG 5 cut(s) 488, 569, 708, 917, 974
BseXI GCAGC 3 cut(s) 166, 356, 530
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 6 cut(s) 30, 36, 533, 677, 737, 966
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 771
BsiSI CCGG 3 cut(s) 54, 775, 812
BslFI GGGAC 2 cut(s) 707, 962
BslI CCNNNNNNNGG 4 cut(s) 415, 416, 483, 574
BsmAI GTCTC 4 cut(s) 181, 358, 719, 888
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 2 cut(s) 707, 962
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 6 cut(s) 30, 36, 533, 677, 737, 966
Bsp1286I GDGCHC 2 cut(s) 312, 771
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 4 cut(s) 208, 289, 450, 454
BspACI CCGC 4 cut(s) 312, 347, 350, 395
BspANI GGCC 6 cut(s) 30, 36, 533, 677, 737, 966
BspCNI CTCAG 2 cut(s) 520, 751
BspDI ATCGAT 1 cut(s) 453
BspLI GGNNCC 5 cut(s) 124, 309, 325, 408, 420
BspMAI CTGCAG 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 2 cut(s) 284, 458
BsrDI GCAATG 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 5 cut(s) 488, 569, 708, 917, 974
BssECI CCNNGG 6 cut(s) 31, 357, 414, 775, 854, 855
BssMI GATC 4 cut(s) 208, 289, 450, 454
BssNI GRCGYC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 3 cut(s) 415, 797, 856
Bst4CI ACNGT 3 cut(s) 115, 604, 943
BstACI GRCGYC 1 cut(s) 696
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 5 cut(s) 6, 312, 516, 613, 953
BstDEI CTNAG 3 cut(s) 528, 759, 898
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 3 cut(s) 87, 292, 624
BstKTI GATC 4 cut(s) 211, 292, 453, 457
BstMAI GTCTC 4 cut(s) 181, 358, 719, 888
BstMBI GATC 4 cut(s) 208, 289, 450, 454
BstMWI GCNNNNNNNGC 3 cut(s) 353, 515, 524
BstNI CCWGG 3 cut(s) 415, 797, 856
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 5 cut(s) 413, 774, 795, 810, 854
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 166, 356, 530
Bsu15I ATCGAT 1 cut(s) 453
BsuRI GGCC 6 cut(s) 30, 36, 533, 677, 737, 966
BsuTUI ATCGAT 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 31
BtrI CACGTC 2 cut(s) 381, 784
BtsCI GGATG 3 cut(s) 87, 292, 624
BtsI GCAGTG 2 cut(s) 321, 510
BtsIMutI CAGTG 5 cut(s) 111, 321, 510, 576, 701
Cac8I GCNNGC 5 cut(s) 6, 312, 516, 613, 953
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 4 cut(s) 406, 419, 584, 964
ClaI ATCGAT 1 cut(s) 453
Csp6I GTAC 3 cut(s) 400, 487, 634
CviAII CATG 3 cut(s) 403, 522, 686
CviQI GTAC 3 cut(s) 400, 487, 634
DdeI CTNAG 3 cut(s) 528, 759, 898
DpnI GATC 4 cut(s) 210, 291, 452, 456
DpnII GATC 4 cut(s) 208, 289, 450, 454
EaeI YGGCCR 2 cut(s) 28, 34
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 677
Eco24I GRGCYC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 749
Eco47I GGWCC 3 cut(s) 406, 419, 584
EcoO109I RGGNCCY 1 cut(s) 419
EcoRII CCWGG 3 cut(s) 413, 795, 854
EcoRV GATATC 1 cut(s) 749
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 406, 525, 689
FaqI GGGAC 2 cut(s) 707, 962
FatI CATG 3 cut(s) 402, 521, 685
FauI CCCGC 1 cut(s) 319
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 4 cut(s) 180, 345, 348, 519
FokI GGATG 3 cut(s) 94, 299, 611
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 4 cut(s) 180, 345, 348, 519
FspBI CTAG 2 cut(s) 581, 612
GluI GCNGC 4 cut(s) 180, 345, 348, 519
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 6 cut(s) 30, 36, 533, 677, 737, 966
HapII CCGG 3 cut(s) 54, 775, 812
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 3 cut(s) 406, 525, 689
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 3 cut(s) 337, 440, 998
HpaII CCGG 3 cut(s) 54, 775, 812
HphI GGTGA 7 cut(s) 43, 97, 267, 373, 574, 791, 904
Hpy166II GTNNAC 7 cut(s) 319, 400, 550, 565, 607, 876, 912
Hpy188III TCNNGA 4 cut(s) 293, 422, 458, 946
Hpy8I GTNNAC 7 cut(s) 319, 400, 550, 565, 607, 876, 912
Hpy99I CGWCG 2 cut(s) 385, 701
HpyAV CCTTC 3 cut(s) 167, 955, 980
HpyCH4III ACNGT 3 cut(s) 115, 604, 943
HpyCH4IV ACGT 3 cut(s) 380, 696, 783
HpyCH4V TGCA 6 cut(s) 182, 201, 468, 595, 685, 955
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 515, 524
HpyF3I CTNAG 3 cut(s) 528, 759, 898
HpySE526I ACGT 3 cut(s) 380, 696, 783
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 3 cut(s) 406, 525, 689
Kzo9I GATC 4 cut(s) 208, 289, 450, 454
LmnI GCTCC 4 cut(s) 56, 176, 307, 774
Lsp1109I GCAGC 3 cut(s) 166, 356, 530
LweI GCATC 2 cut(s) 281, 624
MaeI CTAG 2 cut(s) 581, 612
MaeII ACGT 3 cut(s) 380, 696, 783
MaeIII GTNAC 3 cut(s) 49, 280, 779
MalI GATC 4 cut(s) 210, 291, 452, 456
MboI GATC 4 cut(s) 208, 289, 450, 454
MboII GAAGA 1 cut(s) 799
MhlI GDGCHC 2 cut(s) 312, 771
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 4 cut(s) 461, 664, 803, 1008
MluNI TGGCCA 1 cut(s) 30
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 885
MnlI CCTC 7 cut(s) 56, 98, 113, 239, 523, 638, 748
Mox20I TGGCCA 1 cut(s) 30
MscI TGGCCA 1 cut(s) 30
MseI TTAA 3 cut(s) 243, 1005, 1018
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 3 cut(s) 54, 775, 812
MspR9I CCNGG 5 cut(s) 415, 776, 797, 812, 856
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 3 cut(s) 415, 797, 856
MwoI GCNNNNNNNGC 3 cut(s) 353, 515, 524
NciI CCSGG 2 cut(s) 776, 812
NdeI CATATG 1 cut(s) 658
NdeII GATC 4 cut(s) 208, 289, 450, 454
NheI GCTAGC 1 cut(s) 611
NlaIII CATG 3 cut(s) 406, 525, 689
NlaIV GGNNCC 5 cut(s) 124, 309, 325, 408, 420
NmuCI GTSAC 3 cut(s) 49, 280, 779
NspI RCATGY 1 cut(s) 689
OliI CACNNNNGTG 1 cut(s) 777
PasI CCCWGGG 1 cut(s) 855
PceI AGGCCT 1 cut(s) 677
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 337, 998
PflMI CCANNNNNTGG 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 810
PkrI GCNGC 4 cut(s) 181, 346, 349, 520
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 413, 795, 854
PspGI CCWGG 3 cut(s) 413, 795, 854
PspN4I GGNNCC 5 cut(s) 124, 309, 325, 408, 420
PspPI GGNCC 4 cut(s) 406, 419, 584, 964
PspPPI RGGWCCY 1 cut(s) 419
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 26
RsaI GTAC 3 cut(s) 401, 488, 635
RsaNI GTAC 3 cut(s) 400, 487, 634
RseI CAYNNNNRTG 1 cut(s) 777
SaqAI TTAA 3 cut(s) 243, 1005, 1018
SatI GCNGC 4 cut(s) 180, 345, 348, 519
Sau3AI GATC 4 cut(s) 208, 289, 450, 454
Sau96I GGNCC 4 cut(s) 406, 419, 584, 964
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 5 cut(s) 415, 776, 797, 812, 856
SduI GDGCHC 2 cut(s) 312, 771
SfaNI GCATC 2 cut(s) 281, 624
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 3 cut(s) 406, 419, 584
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 2 cut(s) 127, 629
SmoI CTYRAG 2 cut(s) 127, 629
Sse9I AATT 4 cut(s) 461, 664, 803, 1008
SseBI AGGCCT 1 cut(s) 677
SsiI CCGC 4 cut(s) 312, 347, 350, 395
SspMI CTAG 2 cut(s) 581, 612
StuI AGGCCT 1 cut(s) 677
StyD4I CCNGG 5 cut(s) 413, 774, 795, 810, 854
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 3 cut(s) 115, 604, 943
TaiI ACGT 3 cut(s) 383, 699, 786
TaqI TCGA 2 cut(s) 99, 453
TasI AATT 4 cut(s) 461, 664, 803, 1008
TatI WGTACW 1 cut(s) 399
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 337, 998
Tru1I TTAA 3 cut(s) 243, 1005, 1018
Tru9I TTAA 3 cut(s) 243, 1005, 1018
TscAI CASTG 5 cut(s) 118, 321, 510, 576, 708
TseFI GTSAC 3 cut(s) 49, 280, 779
TseI GCWGC 3 cut(s) 179, 344, 518
Tsp45I GTSAC 3 cut(s) 49, 280, 779
TspDTI ATGAA 2 cut(s) 58, 951
TspGWI ACGGA 2 cut(s) 299, 336
TspRI CASTG 5 cut(s) 118, 321, 510, 576, 708
Van91I CCANNNNNTGG 1 cut(s) 483
VpaK11BI GGWCC 3 cut(s) 406, 419, 584
XapI RAATTY 3 cut(s) 461, 803, 1008
XceI RCATGY 1 cut(s) 689
XspI CTAG 2 cut(s) 581, 612
ZraI GACGTC 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.