pycom17g22650

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002169
Physical Location & Seq
Forward (+)
21032025 .. 21033091
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGGACCCCGCCAGGGGTCCTGATGTGGTGGTTGATGAGTCTTGTTGGAGTGATCTTGAATTTTGCAAGAACACCAAGAACTGGTACTGCTATGGGAAAGCAGTGGCAGAGCAGGCAGCATGGGTTGAGGCCAAAGAGAAAGGGGTGGACTTGGTGGTGGTGAATCCAGTGCTAGTGCTCGGACCACTTCTGCAATCAACTGTCAACGCTAGCACCATTCACATCCTCAAGTACCTGACGGGCTCAACCCAGACATATGCCAATTCAGTTCAAGGCTACGTGCATGTTAGGGACGTCGCACTGGCTCACATTCTGGTCTATGAGACACCCTCTGCCTCTGGCAGATATATTTGTGCTGAGAGTGTGCTCCACCGTGGCGACGTGGTGGAAATCCTGGCCAAATTCTTCCCGAAATACCCTATTCCCAACAAGTAA

Protein Analysis

145

Amino Acids

15.9

Weight (kDa)

6.05

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 21 - 113 1e-05 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
AccB7I CCANNNNNTGG 1 cut(s) 81
AciI CCGC 1 cut(s) 9
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 2 cut(s) 59, 401
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 86, 233
AfiI CCNNNNNNNGG 3 cut(s) 13, 14, 81
AgsI TTSAA 2 cut(s) 59, 272
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 11, 393
Alw21I GWGCWC 2 cut(s) 180, 369
Alw26I GTCTC 1 cut(s) 317
AoxI GGCC 2 cut(s) 129, 396
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 59, 401
AspS9I GGNCC 3 cut(s) 4, 17, 182
AsuHPI GGTGA 1 cut(s) 172
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 3 cut(s) 4, 17, 182
BalI TGGCCA 1 cut(s) 398
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 180, 369
BbvI GCAGC 1 cut(s) 128
BciT130I CCWGG 2 cut(s) 13, 395
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 2 cut(s) 173, 210
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 13, 395
Bme18I GGWCC 3 cut(s) 4, 17, 182
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 3 cut(s) 4, 17, 182
BmiI GGNNCC 2 cut(s) 6, 18
BmrFI CCNGG 2 cut(s) 13, 395
BmtI GCTAGC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 12, 373
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 14, 81
Bse1I ACTGG 3 cut(s) 86, 167, 306
BseBI CCWGG 2 cut(s) 13, 395
BseDI CCNNGG 2 cut(s) 12, 373
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 13, 14, 81
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 3 cut(s) 86, 167, 306
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 2 cut(s) 131, 398
BsiHKAI GWGCWC 2 cut(s) 180, 369
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 3 cut(s) 13, 14, 81
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 2 cut(s) 131, 398
Bsp1286I GDGCHC 3 cut(s) 180, 245, 369
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 131, 398
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 6, 18
BspOI GCTAGC 1 cut(s) 213
BsrI ACTGG 3 cut(s) 86, 167, 306
BssECI CCNNGG 2 cut(s) 12, 373
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 13, 395
Bst4CI ACNGT 2 cut(s) 202, 374
BstACI GRCGYC 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 280
BstC8I GCNNGC 2 cut(s) 114, 211
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 2 cut(s) 13, 395
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 11, 393
BstV1I GCAGC 1 cut(s) 128
BsuRI GGCC 2 cut(s) 131, 398
BtgI CCRYGG 1 cut(s) 373
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 3 cut(s) 108, 174, 299
Cac8I GCNNGC 2 cut(s) 114, 211
Cfr13I GGNCC 3 cut(s) 4, 17, 182
Csp6I GTAC 2 cut(s) 85, 232
CviAII CATG 2 cut(s) 120, 284
CviJI RGCY 5 cut(s) 131, 243, 276, 305, 398
CviKI_1 RGCY 5 cut(s) 131, 243, 276, 305, 398
CviQI GTAC 2 cut(s) 85, 232
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 3 cut(s) 4, 17, 182
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 11, 393
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 2 cut(s) 123, 287
FaiI YATR 7 cut(s) 93, 121, 256, 258, 285, 321, 348
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 119, 283
FauI CCCGC 1 cut(s) 16
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 173, 210
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 131, 398
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 2 cut(s) 123, 287
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 38, 163
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 148, 205
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 3 cut(s) 20, 56, 409
Hpy8I GTNNAC 2 cut(s) 148, 205
Hpy99I CGWCG 2 cut(s) 299, 383
HpyCH4III ACNGT 2 cut(s) 202, 374
HpyCH4IV ACGT 3 cut(s) 279, 294, 381
HpyCH4V TGCA 3 cut(s) 66, 193, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 3 cut(s) 279, 294, 381
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 2 cut(s) 123, 287
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 372
Lsp1109I GCAGC 1 cut(s) 128
MaeI CTAG 2 cut(s) 173, 210
MaeII ACGT 3 cut(s) 279, 294, 381
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 397
MhlI GDGCHC 3 cut(s) 180, 245, 369
MlsI TGGCCA 1 cut(s) 398
MluCI AATT 3 cut(s) 59, 262, 401
MluNI TGGCCA 1 cut(s) 398
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 4 cut(s) 121, 236, 340, 346
Mox20I TGGCCA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 13, 395
MvaI CCWGG 2 cut(s) 13, 395
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 52
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 2 cut(s) 123, 287
NlaIV GGNNCC 2 cut(s) 6, 18
NspI RCATGY 1 cut(s) 287
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 11, 393
PspGI CCWGG 2 cut(s) 11, 393
PspN4I GGNNCC 2 cut(s) 6, 18
PspPI GGNCC 3 cut(s) 4, 17, 182
PspPPI RGGWCCY 1 cut(s) 17
RsaI GTAC 2 cut(s) 86, 233
RsaNI GTAC 2 cut(s) 85, 232
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 3 cut(s) 4, 17, 182
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 13, 395
SduI GDGCHC 3 cut(s) 180, 245, 369
SetI ASST 4 cut(s) 237, 282, 297, 384
SinI GGWCC 3 cut(s) 4, 17, 182
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 59, 262, 401
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 173, 210
StyD4I CCNGG 2 cut(s) 11, 393
TaaI ACNGT 2 cut(s) 202, 374
TaiI ACGT 3 cut(s) 282, 297, 384
TasI AATT 3 cut(s) 59, 262, 401
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 3 cut(s) 108, 174, 306
TseI GCWGC 1 cut(s) 116
TspRI CASTG 3 cut(s) 108, 174, 306
Van91I CCANNNNNTGG 1 cut(s) 81
VpaK11BI GGWCC 3 cut(s) 4, 17, 182
XapI RAATTY 2 cut(s) 59, 401
XceI RCATGY 1 cut(s) 287
XspI CTAG 2 cut(s) 173, 210
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.