pycom17g22670

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002169
Physical Location & Seq
Forward (+)
21043883 .. 21046500
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 999 bp
ATGAAGACCGCTGTTCTTGTTTTTTGCCTCCCCATTCTTCCAGCACAAACGCACTTCAAACTTTCCTTTTCGTCTCTTCTCTTCTTATCTCTTTCGCTCCCAACAACCCCAAAAAAGAAAGTCTGTATCGTATCTCGTCCGGAAACAAAGCTAATAACCAAGATGCCTGCCGATAGCTCATCAATTTCCGGCCACGGCCAAACTATTTGTGTCACTGGAGCTGGAGGCTTCATTGCTTCTTGGATGGTGAAGCTATTACTCGAAAGCGGCTACACTGTTCGAGGAACCTTGAGAAACCCACATGACCCAAAGAATGCTTATTTGAGAGAGCTTGAAGGAGCTGCAGAGAGACTAACTTTGTGCAGAGCTGATCTCCTCGATTATGAGAGCCTCAAAGAAGCCATTAACGGCTGTGATGGAGTTTTTCACACAGCATCACCTGTCACGGATGATCCAGAACAAATGGTGGAGCCCTCAGTGAACGGAACCAAGAATGTGATTCAGGCAGCGGCGGAAGGAAAGGTGAAACGGGTGGTTTTCACGTCGTCAATCGGTGCGGTGTACATGGACCCCACCAGGGGTCCTGATGTGGTGGTTGATGAATCTTGTTGGAGTGATCTTGAATTTTGCAAGAACACCAAGAACTGGTACTGCTACGGGAAAGCAGTGGCAGAGCAGGCAGCATGGGCTGAGGCCAAAGAGAAAGGGGTGGACTTGGTGGTGGTGAACCCAGTGTTGGTGCTCGGACCACTTCTGCAACCAACTGTTAACGCTAGCATCATTCATATCCTCAAGTACTTGAAAGGCTCAACCCAAACATATGCCAATTCAGTTCAGGCCTACGTGCATGTTAGGGACGTTGCACTAGCTCACATTCTGGTTTATGAGACACCCTCTGCCTCTGGCAGATATATTTGTGCTGAGAGTGTGCTCCATCGTGGCGATGTGGTGGAAATCCTGGCCAAATTCTTCCCGGAATACCCTATTCCCAACAAGTAA

Protein Analysis

333

Amino Acids

36.22

Weight (kDa)

7.06

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 67 - 186 1.4e-13 NmrA-like family
KR PF08659 68 - 191 7e-06 KR domain
Epimerase PF01370 69 - 301 1.1e-29 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 69 - 188 2.4e-07 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 71 - 294 2.2e-20 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 71 - 318 8.4e-14 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 71 - 253 6.1e-12 Male sterility protein
NAD_binding_10 PF13460 73 - 189 1.8e-17 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 645
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 5 cut(s) 9, 267, 509, 512, 557
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 3 cut(s) 190, 196, 960
AcsI RAATTY 2 cut(s) 623, 965
AfaI GTAC 3 cut(s) 563, 650, 797
AfiI CCNNNNNNNGG 4 cut(s) 577, 578, 645, 736
AgsI TTSAA 4 cut(s) 58, 335, 623, 802
AjiI CACGTC 1 cut(s) 543
AjnI CCWGG 2 cut(s) 575, 957
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 8 cut(s) 151, 177, 221, 253, 331, 341, 368, 869
AluI AGCT 8 cut(s) 151, 177, 221, 253, 331, 341, 368, 869
Alw21I GWGCWC 2 cut(s) 744, 933
Alw26I GTCTC 3 cut(s) 78, 343, 881
AlwI GGATC 1 cut(s) 446
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 5 cut(s) 190, 196, 693, 837, 960
ApeKI GCWGC 3 cut(s) 341, 506, 680
ApoI RAATTY 2 cut(s) 623, 965
AspS9I GGNCC 3 cut(s) 568, 581, 746
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 4 cut(s) 259, 429, 535, 736
AsuNHI GCTAGC 1 cut(s) 773
AvaII GGWCC 3 cut(s) 568, 581, 746
BalI TGGCCA 1 cut(s) 962
BanII GRGCYC 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 744, 933
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 3 cut(s) 328, 518, 692
BccI CCATC 3 cut(s) 238, 410, 942
BceAI ACGGC 2 cut(s) 211, 424
BciT130I CCWGG 2 cut(s) 577, 959
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 3 cut(s) 78, 343, 881
BfaI CTAG 2 cut(s) 774, 866
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 5 cut(s) 268, 342, 507, 510, 681
BlsI GCNGC 5 cut(s) 269, 343, 508, 511, 682
BmcAI AGTACT 1 cut(s) 797
Bme1390I CCNGG 3 cut(s) 577, 959, 974
Bme18I GGWCC 3 cut(s) 568, 581, 746
BmgBI CACGTC 1 cut(s) 543
BmgT120I GGNCC 3 cut(s) 568, 581, 746
BmiI GGNNCC 5 cut(s) 286, 471, 487, 570, 582
BmrFI CCNGG 3 cut(s) 577, 959, 974
BmrI ACTGGG 1 cut(s) 725
BmsI GCATC 3 cut(s) 153, 443, 786
BmtI GCTAGC 1 cut(s) 777
BmuI ACTGGG 1 cut(s) 725
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 4 cut(s) 357, 389, 878, 910
BpmI CTGGAG 2 cut(s) 237, 243
Bpu10I CCTNAGC 1 cut(s) 690
BpuEI CTTGAG 2 cut(s) 310, 776
BpuMI CCSGG 1 cut(s) 974
BsaAI YACGTR 1 cut(s) 844
BsaJI CCNNGG 2 cut(s) 193, 576
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 4 cut(s) 577, 578, 645, 736
Bse1I ACTGG 3 cut(s) 220, 650, 731
Bse3DI GCAATG 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 139
BseBI CCWGG 2 cut(s) 577, 959
BseDI CCNNGG 2 cut(s) 193, 576
BseGI GGATG 2 cut(s) 249, 454
BseLI CCNNNNNNNGG 4 cut(s) 577, 578, 645, 736
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 3 cut(s) 489, 681, 912
BseNI ACTGG 3 cut(s) 220, 650, 731
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 3 cut(s) 328, 518, 692
BsgI GTGCAG 1 cut(s) 382
BshFI GGCC 5 cut(s) 192, 198, 695, 839, 962
BsiHKAI GWGCWC 2 cut(s) 744, 933
BsiSI CCGG 3 cut(s) 140, 189, 974
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 4 cut(s) 577, 578, 645, 736
BsmAI GTCTC 3 cut(s) 78, 343, 881
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 869
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 5 cut(s) 192, 198, 695, 839, 962
Bsp1286I GDGCHC 3 cut(s) 474, 744, 933
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 3 cut(s) 370, 451, 616
BspACI CCGC 5 cut(s) 9, 267, 509, 512, 557
BspANI GGCC 5 cut(s) 192, 198, 695, 839, 962
BspCNI CTCAG 3 cut(s) 488, 682, 913
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 5 cut(s) 286, 471, 487, 570, 582
BspMAI CTGCAG 1 cut(s) 346
BspOI GCTAGC 1 cut(s) 777
BspPI GGATC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 3 cut(s) 220, 650, 731
BssECI CCNNGG 2 cut(s) 193, 576
BssMI GATC 3 cut(s) 370, 451, 616
Bst2UI CCWGG 2 cut(s) 577, 959
Bst4CI ACNGT 2 cut(s) 277, 766
Bst6I CTCTTC 2 cut(s) 81, 86
BstAUI TGTACA 1 cut(s) 561
BstBAI YACGTR 1 cut(s) 844
BstC8I GCNNGC 3 cut(s) 168, 678, 775
BstDEI CTNAG 3 cut(s) 475, 690, 921
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 2 cut(s) 249, 454
BstKTI GATC 3 cut(s) 373, 454, 619
BstMAI GTCTC 3 cut(s) 78, 343, 881
BstMBI GATC 3 cut(s) 370, 451, 616
BstMWI GCNNNNNNNGC 2 cut(s) 677, 686
BstNI CCWGG 2 cut(s) 577, 959
BstNSI RCATGY 1 cut(s) 851
BstSCI CCNGG 3 cut(s) 575, 957, 972
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 328, 518, 692
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 5 cut(s) 192, 198, 695, 839, 962
BtgI CCRYGG 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 957
BtrI CACGTC 1 cut(s) 543
BtsCI GGATG 2 cut(s) 249, 454
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 5 cut(s) 213, 273, 483, 672, 738
Cac8I GCNNGC 3 cut(s) 168, 678, 775
Cfr13I GGNCC 3 cut(s) 568, 581, 746
Csp6I GTAC 3 cut(s) 562, 649, 796
CviAII CATG 4 cut(s) 302, 565, 684, 848
CviQI GTAC 3 cut(s) 562, 649, 796
DdeI CTNAG 3 cut(s) 475, 690, 921
DpnI GATC 3 cut(s) 372, 453, 618
DpnII GATC 3 cut(s) 370, 451, 616
EaeI YGGCCR 3 cut(s) 190, 196, 960
Eam1104I CTCTTC 2 cut(s) 81, 86
EarI CTCTTC 2 cut(s) 81, 86
EciI GGCGGA 1 cut(s) 527
Eco147I AGGCCT 1 cut(s) 839
Eco24I GRGCYC 1 cut(s) 474
Eco47I GGWCC 3 cut(s) 568, 581, 746
EcoO109I RGGNCCY 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 575, 957
EcoT38I GRGCYC 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 4 cut(s) 305, 568, 687, 851
FaqI GGGAC 1 cut(s) 869
FatI CATG 4 cut(s) 301, 564, 683, 847
FauNDI CATATG 1 cut(s) 820
Fnu4HI GCNGC 5 cut(s) 268, 342, 507, 510, 681
FokI GGATG 2 cut(s) 256, 461
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 5 cut(s) 268, 342, 507, 510, 681
FspBI CTAG 2 cut(s) 774, 866
GluI GCNGC 5 cut(s) 268, 342, 507, 510, 681
GsuI CTGGAG 2 cut(s) 237, 243
HaeIII GGCC 5 cut(s) 192, 198, 695, 839, 962
HapII CCGG 3 cut(s) 140, 189, 974
Hin1II CATG 4 cut(s) 305, 568, 687, 851
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 2 cut(s) 499, 602
HpaI GTTAAC 1 cut(s) 769
HpaII CCGG 3 cut(s) 140, 189, 974
HphI GGTGA 4 cut(s) 259, 429, 535, 736
Hpy166II GTNNAC 5 cut(s) 481, 562, 712, 727, 769
Hpy188I TCNGA 1 cut(s) 746
Hpy188III TCNNGA 4 cut(s) 140, 455, 584, 620
Hpy8I GTNNAC 5 cut(s) 481, 562, 712, 727, 769
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 2 cut(s) 329, 509
HpyCH4III ACNGT 2 cut(s) 277, 766
HpyCH4IV ACGT 3 cut(s) 542, 843, 858
HpyCH4V TGCA 6 cut(s) 344, 363, 630, 757, 847, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 677, 686
HpyF3I CTNAG 3 cut(s) 475, 690, 921
HpySE526I ACGT 3 cut(s) 542, 843, 858
Hsp92II CATG 4 cut(s) 305, 568, 687, 851
Kpn2I TCCGGA 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 3 cut(s) 370, 451, 616
LmnI GCTCC 5 cut(s) 102, 218, 338, 469, 936
Lsp1109I GCAGC 3 cut(s) 328, 518, 692
LweI GCATC 3 cut(s) 153, 443, 786
MaeI CTAG 2 cut(s) 774, 866
MaeII ACGT 3 cut(s) 542, 843, 858
MaeIII GTNAC 2 cut(s) 211, 442
MalI GATC 3 cut(s) 372, 453, 618
MboI GATC 3 cut(s) 370, 451, 616
MboII GAAGA 5 cut(s) 16, 29, 68, 73, 961
MhlI GDGCHC 3 cut(s) 474, 744, 933
MlsI TGGCCA 1 cut(s) 962
MluCI AATT 4 cut(s) 183, 623, 826, 965
MluNI TGGCCA 1 cut(s) 962
MmeI TCCRAC 1 cut(s) 590
Mox20I TGGCCA 1 cut(s) 962
MroI TCCGGA 1 cut(s) 139
MscI TGGCCA 1 cut(s) 962
MseI TTAA 2 cut(s) 405, 768
Msp20I TGGCCA 1 cut(s) 962
MspA1I CMGCKG 2 cut(s) 11, 509
MspI CCGG 3 cut(s) 140, 189, 974
MspR9I CCNGG 3 cut(s) 577, 959, 974
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 2 cut(s) 577, 959
MwoI GCNNNNNNNGC 2 cut(s) 677, 686
NciI CCSGG 1 cut(s) 974
NdeI CATATG 1 cut(s) 820
NdeII GATC 3 cut(s) 370, 451, 616
NheI GCTAGC 1 cut(s) 773
NlaIII CATG 4 cut(s) 305, 568, 687, 851
NlaIV GGNNCC 5 cut(s) 286, 471, 487, 570, 582
NmuCI GTSAC 2 cut(s) 211, 442
NspI RCATGY 1 cut(s) 851
PceI AGGCCT 1 cut(s) 839
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 499, 602
PflMI CCANNNNNTGG 1 cut(s) 645
PfoI TCCNGGA 1 cut(s) 972
PkrI GCNGC 5 cut(s) 269, 343, 508, 511, 682
Ppu21I YACGTR 1 cut(s) 844
PpuMI RGGWCCY 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 575, 957
PspGI CCWGG 2 cut(s) 575, 957
PspN4I GGNNCC 5 cut(s) 286, 471, 487, 570, 582
PspPI GGNCC 3 cut(s) 568, 581, 746
PspPPI RGGWCCY 1 cut(s) 581
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 3 cut(s) 563, 650, 797
RsaNI GTAC 3 cut(s) 562, 649, 796
SaqAI TTAA 2 cut(s) 405, 768
SatI GCNGC 5 cut(s) 268, 342, 507, 510, 681
Sau3AI GATC 3 cut(s) 370, 451, 616
Sau96I GGNCC 3 cut(s) 568, 581, 746
ScaI AGTACT 1 cut(s) 797
ScrFI CCNGG 3 cut(s) 577, 959, 974
SduI GDGCHC 3 cut(s) 474, 744, 933
SfaNI GCATC 3 cut(s) 153, 443, 786
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 3 cut(s) 568, 581, 746
SmlI CTYRAG 2 cut(s) 289, 791
SmoI CTYRAG 2 cut(s) 289, 791
Sse9I AATT 4 cut(s) 183, 623, 826, 965
SseBI AGGCCT 1 cut(s) 839
SsiI CCGC 5 cut(s) 9, 267, 509, 512, 557
SspMI CTAG 2 cut(s) 774, 866
StuI AGGCCT 1 cut(s) 839
StyD4I CCNGG 3 cut(s) 575, 957, 972
TaaI ACNGT 2 cut(s) 277, 766
TaiI ACGT 3 cut(s) 545, 846, 861
TaqI TCGA 3 cut(s) 261, 280, 378
TasI AATT 4 cut(s) 183, 623, 826, 965
TatI WGTACW 2 cut(s) 561, 795
TauI GCSGC 2 cut(s) 270, 512
TfiI GAWTC 2 cut(s) 499, 602
Tru1I TTAA 2 cut(s) 405, 768
Tru9I TTAA 2 cut(s) 405, 768
TscAI CASTG 5 cut(s) 220, 280, 483, 672, 738
TseFI GTSAC 2 cut(s) 211, 442
TseI GCWGC 3 cut(s) 341, 506, 680
Tsp45I GTSAC 2 cut(s) 211, 442
TspDTI ATGAA 4 cut(s) 17, 220, 615, 773
TspGWI ACGGA 2 cut(s) 461, 498
TspRI CASTG 5 cut(s) 220, 280, 483, 672, 738
Van91I CCANNNNNTGG 1 cut(s) 645
VpaK11BI GGWCC 3 cut(s) 568, 581, 746
XapI RAATTY 2 cut(s) 623, 965
XceI RCATGY 1 cut(s) 851
XspI CTAG 2 cut(s) 774, 866
ZrmI AGTACT 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.