RchiOBHm_Chr3g0460601

Transmembrane protein 205

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003018
Physical Location & Seq
Reverse (-)
8649647 .. 8649901
255 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGTTCAAGAATCTTCCGAGGCATCAGTTCGGTAATCTGCAAAGCAAGATGTTTCCAGCTTATTTCACCATGGTGGGGATTTGTTGTGCCATATTGGTGGCTTCGTTTGGGTATTTGCATCCATGGAAGTCTTCCATTGTAGCAGACAAGTACCGGCTCGACCTTTCGCTTTCTTCCTTCTTCTTCAATCTCACCAATTTGTTCGTCTTCACGCCCATGACTATTGAGATGATGAAGCAAAGGCATATAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4149

Protein Analysis

84

Amino Acids

9.87

Weight (kDa)

9.83

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4149 PF13664 1 - 82 1.2e-20 Domain of unknown function (DUF4149)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 7, 187
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 58, 184
BbsI GAAGAC 2 cut(s) 123, 199
BmsI GCATC 2 cut(s) 31, 127
BpiI GAAGAC 2 cut(s) 123, 199
BsaJI CCNNGG 3 cut(s) 17, 69, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 17, 69, 122
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 75
Bsp19I CCATGG 2 cut(s) 69, 122
BsrFI RCCGGY 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 3 cut(s) 17, 69, 122
BssT1I CCWWGG 2 cut(s) 69, 122
BstDSI CCRYGG 2 cut(s) 69, 122
BstF5I GGATG 1 cut(s) 118
BstV2I GAAGAC 2 cut(s) 123, 199
BstXI CCANNNNNNTGG 1 cut(s) 97
BtgI CCRYGG 2 cut(s) 69, 122
BtsCI GGATG 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 153
Csp6I GTAC 1 cut(s) 151
CviAII CATG 3 cut(s) 70, 123, 217
CviJI RGCY 3 cut(s) 59, 101, 157
CviKI_1 RGCY 3 cut(s) 59, 101, 157
CviQI GTAC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 69, 122
EcoT14I CCWWGG 2 cut(s) 69, 122
ErhI CCWWGG 2 cut(s) 69, 122
FaeI CATG 3 cut(s) 73, 126, 220
FaiI YATR 6 cut(s) 71, 92, 124, 218, 246, 248
FatI CATG 3 cut(s) 69, 122, 216
FokI GGATG 1 cut(s) 105
HapII CCGG 1 cut(s) 154
Hin1II CATG 3 cut(s) 73, 126, 220
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 154
HphI GGTGA 2 cut(s) 58, 184
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 40, 118
Hsp92II CATG 3 cut(s) 73, 126, 220
LpnPI CCDG 2 cut(s) 69, 167
LweI GCATC 2 cut(s) 31, 127
MboII GAAGA 6 cut(s) 5, 123, 165, 172, 175, 199
MluCI AATT 1 cut(s) 196
MnlI CCTC 1 cut(s) 12
MslI CAYNNNNRTG 3 cut(s) 71, 95, 215
MspI CCGG 1 cut(s) 154
NcoI CCATGG 2 cut(s) 69, 122
NlaIII CATG 3 cut(s) 73, 126, 220
OliI CACNNNNGTG 1 cut(s) 71
PfeI GAWTC 1 cut(s) 10
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 3 cut(s) 71, 95, 215
SetI ASST 3 cut(s) 61, 165, 254
SfaNI GCATC 2 cut(s) 31, 127
SmiMI CAYNNNNRTG 3 cut(s) 71, 95, 215
Sse9I AATT 1 cut(s) 196
StyI CCWWGG 2 cut(s) 69, 122
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 196
TfiI GAWTC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.