RchiOBHm_Chr3g0496291

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002523
Physical Location & Seq
Reverse (-)
47031480 .. 47032814
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1335 bp
ATGGCTAAGGTGAATAGTGGGGATGGCAGGGAGTTCAATGAGCTTGAGAGTGACACCTCAGGTGCAAATCCTGTGGCAATAAAGAAGGGGATTGATAAGACTGTACAAGCATTGGTAGGCGAACTAGAAAACAAATCTAGGCTTGTTAAGGGTCATGATCATGTTACAGCTGCTACATGTATGTCTGCTGGGAGTGATGTGCAACTTGGAACAATGATTGTTGTTGCCATCGACAAGGCTGGACAAAAAGCTAAGAAAAAGCAAGTGGATGAAAAGATTTCTCAACTTTCTACTGAGCTTAAAGAGAAACAAGCTAAAGAACTTGCATTATTAAGCTATAGCAGCACTGACAATGAAGGTGAACCGAGTAATCTGGATACTTTAATGAAGGTCATCGCTGGTGTTTCTATGAGCAGTCACCTTGAGAATGTAAAGCCTAGCAAGAGTTCAAGGAAAAAAGTGAAAAGGGCTCAGGAGGATGCAAGAAGGAAACAGAGAATTCAAGAAGAGCAGAGCAAATCAATAAGCAATCAAATGGTCGAAGATGAGAAACTAGGAAAAAGGCTTGAACCCCTTGATGTGACAATTACTGAGATAAAGGTTAGTGGTCTTTGCCTCTACCGTGTTATCCGGGATCAGCTAGCCCACCATTCAGGAGGCTTTTCACCTTACTCATACCAAGGGCTTCGAGAAATGGTGGCTGTTTATAAGTGTCATGTACCTGAGTTCCCATCTTTCGTGCCAAACAACCAAGTAGATGGTGATTCCGACAACTCACTTGTAGAGAGGTTTGAGAATTACTGGAAGGAAGTGGATTCAACGGAAGCATGGGGAGGACAGCTAGGGCTTGGTGCTTTAACTCATTGCCTTAAAAAGTCTCTTACTGTATGCTCAGGATCATTCCCTAAGGTAGAGAATGTGAATGGCATCATTGGACCAGCCCATTATATGGTTCAACAGCTTGATGGAACTACAAATAAATGGAGTTGGTGCAAACAAGAGCTCGGAGAAAACAGTATATTGGCAATGTTTCTTGCTGGTTGTAAAGCATGTGCCATTGTAAACAGGATACCCCTCTTCAAGCACATAGCCAGTCTTCCTGGAAAAAAGACCTTGGTTCTCCCTGTTCCAAATAAACCCGGTAGTGAATATAATGGTATTCTCAATATTGGCTGCATGAGGCATCCTGATAACTACAAGTGTGATGATCACCTATTTTTTTTGTACAGAGTTTTCATTGAGCCTCTGATTGCTTGCTACTCGAGATACATAGATAAGCAGCCCAGCCTTGGAAGGTATGATGATAGTCATCTAAAGTTTCATCTACTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

444

Amino Acids

49.35

Weight (kDa)

8.34

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 203 - 303 2.1e-10 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
AccB7I CCANNNNNTGG 1 cut(s) 949
AclWI GGATC 2 cut(s) 642, 904
AcsI RAATTY 1 cut(s) 498
AfaI GTAC 3 cut(s) 105, 720, 1226
AfiI CCNNNNNNNGG 2 cut(s) 949, 1289
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 7 cut(s) 37, 450, 503, 569, 819, 956, 1081
AjnI CCWGG 1 cut(s) 1099
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 1 cut(s) 882
AlwI GGATC 2 cut(s) 642, 904
Ama87I CYCGRG 1 cut(s) 1261
ApeKI GCWGC 4 cut(s) 170, 342, 1173, 1279
ApoI RAATTY 1 cut(s) 498
AspS9I GGNCC 1 cut(s) 935
AsuC2I CCSGG 2 cut(s) 632, 1140
AsuHPI GGTGA 6 cut(s) 22, 371, 410, 657, 773, 1202
AsuNHI GCTAGC 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 1261
AvaII GGWCC 1 cut(s) 935
AxyI CCTNAGG 2 cut(s) 58, 906
BanII GRGCYC 2 cut(s) 472, 1005
BbsI GAAGAC 1 cut(s) 1088
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 4 cut(s) 157, 354, 1160, 1291
BccI CCATC 5 cut(s) 17, 236, 739, 752, 959
BciT130I CCWGG 1 cut(s) 1101
BciVI GTATCC 2 cut(s) 370, 1062
BclI TGATCA 2 cut(s) 157, 1207
BcnI CCSGG 2 cut(s) 632, 1140
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 6 cut(s) 125, 138, 438, 554, 641, 842
BfmI CTRYAG 1 cut(s) 337
BfuI GTATCC 2 cut(s) 370, 1062
BisI GCNGC 4 cut(s) 171, 343, 1174, 1280
BlsI GCNGC 4 cut(s) 172, 344, 1175, 1281
Bme1390I CCNGG 3 cut(s) 632, 1101, 1140
Bme18I GGWCC 1 cut(s) 935
BmeT110I CYCGRG 1 cut(s) 1261
BmgT120I GGNCC 1 cut(s) 935
BmrFI CCNGG 3 cut(s) 632, 1101, 1140
BmsI GCATC 3 cut(s) 469, 936, 1192
BmtI GCTAGC 1 cut(s) 644
BpiI GAAGAC 1 cut(s) 1088
Bpu10I CCTNAGC 3 cut(s) 6, 471, 892
BpuEI CTTGAG 2 cut(s) 65, 443
BpuMI CCSGG 2 cut(s) 632, 1140
BsaBI GATNNNNATC 1 cut(s) 1308
BsaJI CCNNGG 3 cut(s) 679, 1113, 1288
Bsc4I CCNNNNNNNGG 2 cut(s) 949, 1289
Bse1I ACTGG 2 cut(s) 806, 1092
Bse21I CCTNAGG 2 cut(s) 58, 906
Bse3DI GCAATG 2 cut(s) 862, 1032
Bse8I GATNNNNATC 1 cut(s) 1308
BseBI CCWGG 1 cut(s) 1101
BseDI CCNNGG 3 cut(s) 679, 1113, 1288
BseGI GGATG 4 cut(s) 28, 274, 484, 1183
BseJI GATNNNNATC 1 cut(s) 1308
BseLI CCNNNNNNNGG 2 cut(s) 949, 1289
BseMI GCAATG 2 cut(s) 862, 1032
BseMII CTCAG 6 cut(s) 72, 285, 485, 582, 714, 906
BseNI ACTGG 2 cut(s) 806, 1092
BseXI GCAGC 4 cut(s) 157, 354, 1160, 1291
BseYI CCCAGC 2 cut(s) 188, 1283
BsiHKAI GWGCWC 1 cut(s) 1005
BsiHKCI CYCGRG 1 cut(s) 1261
BsiSI CCGG 2 cut(s) 631, 1140
BslI CCNNNNNNNGG 2 cut(s) 949, 1289
BsmAI GTCTC 1 cut(s) 882
BsoBI CYCGRG 1 cut(s) 1261
Bsp1286I GDGCHC 2 cut(s) 472, 1005
Bsp1407I TGTACA 2 cut(s) 103, 1224
Bsp143I GATC 4 cut(s) 157, 634, 896, 1207
BspCNI CTCAG 6 cut(s) 71, 286, 484, 583, 715, 905
BspHI TCATGA 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 644
BspPI GGATC 2 cut(s) 642, 904
BspQI GCTCTTC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 862, 1032
BsrGI TGTACA 2 cut(s) 103, 1224
BsrI ACTGG 2 cut(s) 806, 1092
BssECI CCNNGG 3 cut(s) 679, 1113, 1288
BssMI GATC 4 cut(s) 157, 634, 896, 1207
BssT1I CCWWGG 3 cut(s) 679, 1113, 1288
Bst2UI CCWGG 1 cut(s) 1101
Bst4CI ACNGT 4 cut(s) 103, 623, 886, 1016
Bst6I CTCTTC 2 cut(s) 501, 1082
BstAUI TGTACA 2 cut(s) 103, 1224
BstC8I GCNNGC 2 cut(s) 642, 1255
BstDEI CTNAG 9 cut(s) 6, 58, 252, 294, 471, 591, 723, 892, 906
BstF5I GGATG 4 cut(s) 28, 274, 484, 1183
BstKTI GATC 4 cut(s) 160, 637, 899, 1210
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 4 cut(s) 157, 634, 896, 1207
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 1 cut(s) 1101
BstNSI RCATGY 2 cut(s) 180, 1053
BstSCI CCNGG 3 cut(s) 630, 1099, 1138
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 4 cut(s) 157, 354, 1160, 1291
BstV2I GAAGAC 1 cut(s) 1088
BstXI CCANNNNNNTGG 1 cut(s) 758
Bsu36I CCTNAGG 2 cut(s) 58, 906
BsuI GTATCC 2 cut(s) 370, 1062
BtgZI GCGATG 1 cut(s) 379
BtsCI GGATG 4 cut(s) 28, 274, 484, 1183
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 642, 1255
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 935
Csp6I GTAC 3 cut(s) 104, 719, 1225
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 7 cut(s) 155, 161, 177, 716, 828, 1050, 1177
CviQI GTAC 3 cut(s) 104, 719, 1225
DdeI CTNAG 9 cut(s) 6, 58, 252, 294, 471, 591, 723, 892, 906
DpnI GATC 4 cut(s) 159, 636, 898, 1209
DpnII GATC 4 cut(s) 157, 634, 896, 1207
Eam1104I CTCTTC 2 cut(s) 501, 1082
EarI CTCTTC 2 cut(s) 501, 1082
Ecl136II GAGCTC 1 cut(s) 1003
Eco130I CCWWGG 3 cut(s) 679, 1113, 1288
Eco24I GRGCYC 2 cut(s) 472, 1005
Eco47I GGWCC 1 cut(s) 935
Eco53kI GAGCTC 1 cut(s) 1003
Eco81I CCTNAGG 2 cut(s) 58, 906
Eco88I CYCGRG 1 cut(s) 1261
EcoICRI GAGCTC 1 cut(s) 1003
EcoRI GAATTC 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 1099
EcoT14I CCWWGG 3 cut(s) 679, 1113, 1288
EcoT38I GRGCYC 2 cut(s) 472, 1005
ErhI CCWWGG 3 cut(s) 679, 1113, 1288
FaeI CATG 7 cut(s) 158, 164, 180, 719, 831, 1053, 1180
FatI CATG 7 cut(s) 154, 160, 176, 715, 827, 1049, 1176
FbaI TGATCA 2 cut(s) 157, 1207
Fnu4HI GCNGC 4 cut(s) 171, 343, 1174, 1280
FokI GGATG 4 cut(s) 35, 281, 491, 1170
FriOI GRGCYC 2 cut(s) 472, 1005
Fsp4HI GCNGC 4 cut(s) 171, 343, 1174, 1280
FspBI CTAG 6 cut(s) 125, 138, 438, 554, 641, 842
GluI GCNGC 4 cut(s) 171, 343, 1174, 1280
GsaI CCCAGC 2 cut(s) 192, 1287
HapII CCGG 2 cut(s) 631, 1140
Hin1II CATG 7 cut(s) 158, 164, 180, 719, 831, 1053, 1180
HinfI GANTC 2 cut(s) 764, 815
HpaII CCGG 2 cut(s) 631, 1140
HphI GGTGA 6 cut(s) 22, 371, 410, 657, 773, 1202
Hpy166II GTNNAC 2 cut(s) 362, 1063
Hpy188I TCNGA 3 cut(s) 769, 1007, 1248
Hpy188III TCNNGA 9 cut(s) 155, 374, 473, 503, 654, 689, 894, 1187, 1263
Hpy8I GTNNAC 2 cut(s) 362, 1063
HpyAV CCTTC 6 cut(s) 79, 350, 382, 480, 799, 1287
HpyCH4III ACNGT 4 cut(s) 103, 623, 886, 1016
HpyCH4V TGCA 6 cut(s) 65, 202, 326, 482, 993, 1176
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 9 cut(s) 6, 58, 252, 294, 471, 591, 723, 892, 906
Hsp92II CATG 7 cut(s) 158, 164, 180, 719, 831, 1053, 1180
Ksp22I TGATCA 2 cut(s) 157, 1207
Kzo9I GATC 4 cut(s) 157, 634, 896, 1207
LguI GCTCTTC 1 cut(s) 501
Lsp1109I GCAGC 4 cut(s) 157, 354, 1160, 1291
LweI GCATC 3 cut(s) 469, 936, 1192
MaeI CTAG 6 cut(s) 125, 138, 438, 554, 641, 842
MaeIII GTNAC 4 cut(s) 50, 163, 416, 580
MalI GATC 4 cut(s) 159, 636, 898, 1209
MboI GATC 4 cut(s) 157, 634, 896, 1207
MboII GAAGA 4 cut(s) 518, 554, 1069, 1088
MhlI GDGCHC 2 cut(s) 472, 1005
MluCI AATT 3 cut(s) 498, 585, 796
MmeI TCCRAC 1 cut(s) 792
MnlI CCTC 9 cut(s) 67, 469, 626, 650, 780, 827, 1085, 1173, 1254
MseI TTAA 6 cut(s) 147, 300, 332, 383, 857, 870
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 631, 1140
MspR9I CCNGG 3 cut(s) 632, 1101, 1140
MvaI CCWGG 1 cut(s) 1101
MwoI GCNNNNNNNGC 1 cut(s) 342
NciI CCSGG 2 cut(s) 632, 1140
NdeII GATC 4 cut(s) 157, 634, 896, 1207
NheI GCTAGC 1 cut(s) 640
NlaIII CATG 7 cut(s) 158, 164, 180, 719, 831, 1053, 1180
NmuCI GTSAC 3 cut(s) 50, 416, 580
NspI RCATGY 2 cut(s) 180, 1053
PaeR7I CTCGAG 1 cut(s) 1261
PagI TCATGA 1 cut(s) 154
PciI ACATGT 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 764, 815
PflMI CCANNNNNTGG 1 cut(s) 949
PfoI TCCNGGA 2 cut(s) 630, 1099
PkrI GCNGC 4 cut(s) 172, 344, 1175, 1281
PscI ACATGT 1 cut(s) 176
PsiI TTATAA 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 1005
Psp6I CCWGG 1 cut(s) 1099
PspFI CCCAGC 2 cut(s) 188, 1283
PspGI CCWGG 1 cut(s) 1099
PspPI GGNCC 1 cut(s) 935
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 3 cut(s) 105, 720, 1226
RsaNI GTAC 3 cut(s) 104, 719, 1225
RseI CAYNNNNRTG 1 cut(s) 159
SacI GAGCTC 1 cut(s) 1005
SapI GCTCTTC 1 cut(s) 501
SaqAI TTAA 6 cut(s) 147, 300, 332, 383, 857, 870
SatI GCNGC 4 cut(s) 171, 343, 1174, 1280
Sau3AI GATC 4 cut(s) 157, 634, 896, 1207
Sau96I GGNCC 1 cut(s) 935
ScrFI CCNGG 3 cut(s) 632, 1101, 1140
SduI GDGCHC 2 cut(s) 472, 1005
SfaNI GCATC 3 cut(s) 469, 936, 1192
SfcI CTRYAG 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 1261
SinI GGWCC 1 cut(s) 935
SlaI CTCGAG 1 cut(s) 1261
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 3 cut(s) 44, 422, 1261
SmoI CTYRAG 3 cut(s) 44, 422, 1261
Sse9I AATT 3 cut(s) 498, 585, 796
SspI AATATT 1 cut(s) 1168
SspMI CTAG 6 cut(s) 125, 138, 438, 554, 641, 842
SstI GAGCTC 1 cut(s) 1005
StyD4I CCNGG 3 cut(s) 630, 1099, 1138
StyI CCWWGG 3 cut(s) 679, 1113, 1288
TaaI ACNGT 4 cut(s) 103, 623, 886, 1016
TaqI TCGA 4 cut(s) 231, 540, 688, 1262
TasI AATT 3 cut(s) 498, 585, 796
TatI WGTACW 2 cut(s) 103, 1224
TfiI GAWTC 2 cut(s) 764, 815
Tru1I TTAA 6 cut(s) 147, 300, 332, 383, 857, 870
Tru9I TTAA 6 cut(s) 147, 300, 332, 383, 857, 870
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 3 cut(s) 50, 416, 580
TseI GCWGC 4 cut(s) 170, 342, 1173, 1279
Tsp45I GTSAC 3 cut(s) 50, 416, 580
TspDTI ATGAA 5 cut(s) 285, 369, 401, 1225, 1310
TspGWI ACGGA 1 cut(s) 836
TspRI CASTG 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 949
VpaK11BI GGWCC 1 cut(s) 935
XapI RAATTY 1 cut(s) 498
XceI RCATGY 2 cut(s) 180, 1053
XhoI CTCGAG 1 cut(s) 1261
XspI CTAG 6 cut(s) 125, 138, 438, 554, 641, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.