RchiOBHm_Chr2g0138841

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003486
Physical Location & Seq
Forward (+)
56486407 .. 56487597
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
ATGACTTCCTATTCAGGTTTGTTGGAAGGAATTGGTCATCCATTTACTAGGAACTTCCAGTTTATTGATTCAGTGAAAGCATACCTATCATATGCTTTGTTGCTAGCTTCAGTTTCGCCGTCCCCTATCATACTACAGTATGCAACTGGAGTTTTTTTTTTAGTGCTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTGTGAACTATGATTATGATCTTGAGGCACAGAACTTGTTTGAGCAGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGCTGCGTCCCAGACTACTTCAATAAAGGGTTCATCTCTTCAGTGTCTTGTAAATGTGCTTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACACTCAGTCTTTGGAAGGAGATCCCTCAGCTAAAGAGTATGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

159

Amino Acids

17.99

Weight (kDa)

7.62

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 175
AclWI GGATC 3 cut(s) 213, 300, 445
AcuI CTGAAG 3 cut(s) 93, 194, 341
AgsI TTSAA 1 cut(s) 339
AluBI AGCT 2 cut(s) 107, 460
AluI AGCT 2 cut(s) 107, 460
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 3 cut(s) 213, 300, 445
ApeKI GCWGC 2 cut(s) 317, 320
AsuNHI GCTAGC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 304, 307
BceAI ACGGC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 2 cut(s) 48, 104
BfmI CTRYAG 1 cut(s) 134
BisI GCNGC 2 cut(s) 318, 321
BlsI GCNGC 2 cut(s) 319, 322
BmsI GCATC 2 cut(s) 204, 283
BmtI GCTAGC 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 3 cut(s) 176, 271, 272
BsaBI GATNNNNATC 2 cut(s) 246, 281
Bse1I ACTGG 2 cut(s) 58, 151
Bse8I GATNNNNATC 2 cut(s) 246, 281
BseGI GGATG 2 cut(s) 37, 298
BseJI GATNNNNATC 2 cut(s) 246, 281
BseMII CTCAG 2 cut(s) 448, 470
BseNI ACTGG 2 cut(s) 58, 151
BseXI GCAGC 2 cut(s) 304, 307
BslFI GGGAC 2 cut(s) 106, 310
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 106, 310
Bsp143I GATC 4 cut(s) 205, 247, 305, 450
BspACI CCGC 1 cut(s) 175
BspCNI CTCAG 2 cut(s) 447, 469
BspOI GCTAGC 1 cut(s) 107
BspPI GGATC 3 cut(s) 213, 300, 445
BsrI ACTGG 2 cut(s) 58, 151
BssMI GATC 4 cut(s) 205, 247, 305, 450
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 434, 456
BstF5I GGATG 2 cut(s) 37, 298
BstKTI GATC 4 cut(s) 208, 250, 308, 453
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 4 cut(s) 205, 247, 305, 450
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 304, 307
BstX2I RGATCY 3 cut(s) 205, 305, 450
BstYI RGATCY 3 cut(s) 205, 305, 450
BtsCI GGATG 2 cut(s) 37, 298
BtsIMutI CAGTG 2 cut(s) 78, 365
Cac8I GCNNGC 1 cut(s) 105
CseI GACGC 1 cut(s) 312
CviAII CATG 1 cut(s) 405
CviJI RGCY 3 cut(s) 107, 317, 460
CviKI_1 RGCY 3 cut(s) 107, 317, 460
DdeI CTNAG 2 cut(s) 434, 456
DpnI GATC 4 cut(s) 207, 249, 307, 452
DpnII GATC 4 cut(s) 205, 247, 305, 450
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco57I CTGAAG 3 cut(s) 93, 194, 341
FaeI CATG 1 cut(s) 408
FaqI GGGAC 2 cut(s) 106, 310
FatI CATG 1 cut(s) 404
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 318, 321
FokI GGATG 2 cut(s) 24, 305
Fsp4HI GCNGC 2 cut(s) 318, 321
FspBI CTAG 2 cut(s) 48, 104
GluI GCNGC 2 cut(s) 318, 321
GsuI CTGGAG 1 cut(s) 168
HgaI GACGC 1 cut(s) 312
Hin1II CATG 1 cut(s) 408
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 68, 413
Hpy166II GTNNAC 2 cut(s) 223, 235
Hpy188I TCNGA 2 cut(s) 213, 418
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 223, 235
HpyAV CCTTC 2 cut(s) 20, 439
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 143, 201, 296, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 434, 456
Hsp92II CATG 1 cut(s) 408
Kzo9I GATC 4 cut(s) 205, 247, 305, 450
LpnPI CCDG 3 cut(s) 71, 132, 341
Lsp1109I GCAGC 2 cut(s) 304, 307
LweI GCATC 2 cut(s) 204, 283
MaeI CTAG 2 cut(s) 48, 104
MalI GATC 4 cut(s) 207, 249, 307, 452
MboI GATC 4 cut(s) 205, 247, 305, 450
MboII GAAGA 2 cut(s) 200, 347
MflI RGATCY 3 cut(s) 205, 305, 450
MluCI AATT 1 cut(s) 30
MnlI CCTC 2 cut(s) 247, 465
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeI CATATG 1 cut(s) 91
NdeII GATC 4 cut(s) 205, 247, 305, 450
NheI GCTAGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 408
PfeI GAWTC 2 cut(s) 68, 413
PkrI GCNGC 2 cut(s) 319, 322
PsuI RGATCY 3 cut(s) 205, 305, 450
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 2 cut(s) 318, 321
Sau3AI GATC 4 cut(s) 205, 247, 305, 450
SetI ASST 5 cut(s) 19, 87, 109, 198, 462
SfaNI GCATC 2 cut(s) 204, 283
SfcI CTRYAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 3 cut(s) 191, 251, 286
SmoI CTYRAG 3 cut(s) 191, 251, 286
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 175
SspMI CTAG 2 cut(s) 48, 104
TaaI ACNGT 1 cut(s) 138
TasI AATT 1 cut(s) 30
TfiI GAWTC 2 cut(s) 68, 413
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 2 cut(s) 78, 365
TseI GCWGC 2 cut(s) 317, 320
TspDTI ATGAA 2 cut(s) 293, 339
TspRI CASTG 2 cut(s) 78, 365
XspI CTAG 2 cut(s) 48, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.