Rh6CG324500

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003486
Physical Location & Seq
Forward (+)
51073938 .. 51102726
28789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG324500.1

Sequence Viewer

Length: 489 bp
ATGAACACTTCGATGAAGCAATCCGATGAAGAATATGGCCGGAGATGGCAAAAAGATAACCAAATGGGCATGAAGGAAGATAACAATGAAGTCACTTTGAAGACGAGGATTTTATCTCTTGAGCTTCTACAGGGTTTGTTGGAAGGACTTCAGTTTCTCCGTTCCTTATCATATTACAGTATGCAACTGGAATTTTTTTTAGTGCTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGGTGAAATATGCATCTTCTTTCCTTTGATAGTTCTCCGGTCCCTGGATGGCTTGGATTTACCTATGAACCAAAAAATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGTAAGGATCTTCAGATGCTTGTTGACATATATGTGAACTATGACTGTGATCTTGAGGCACCAAACTTGTTTGAGCGGATGGAAGTTAAGTGCTATTGTCTAGAGCATGAACCTGCAGCAGCAGCTTGGATATGGGATGTTTCAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

162

Amino Acids

19.08

Weight (kDa)

4.81

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 55 - 136 8.1e-20 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 397
AccBSI CCGCTC 1 cut(s) 415
AciI CCGC 2 cut(s) 214, 415
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 2 cut(s) 134, 335
AfiI CCNNNNNNNGG 2 cut(s) 277, 325
AgsI TTSAA 2 cut(s) 100, 332
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 2 cut(s) 124, 464
AluI AGCT 2 cut(s) 124, 464
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 354
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 3 cut(s) 455, 458, 461
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 320
BanI GGYRCC 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 467, 470, 473
BccI CCATC 4 cut(s) 39, 275, 319, 412
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 2 cut(s) 128, 453
BfuAI ACCTGC 1 cut(s) 460
BisI GCNGC 3 cut(s) 456, 459, 462
BlsI GCNGC 3 cut(s) 457, 460, 463
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 275, 399
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 255, 345
BpiI GAAGAC 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 213, 245
BpuEI CTTGAG 3 cut(s) 140, 215, 413
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 325
Bse1I ACTGG 1 cut(s) 192
Bse21I CCTNAGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 4 cut(s) 286, 330, 423, 481
BseLI CCNNNNNNNGG 2 cut(s) 277, 325
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 467, 470, 473
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 397
BsiSI CCGG 2 cut(s) 40, 271
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 277, 325
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 346, 388
BspACI CCGC 2 cut(s) 214, 415
BspANI GGCC 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 275, 399
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 415
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 346, 388
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 179, 386
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 4 cut(s) 286, 330, 423, 481
BstKTI GATC 2 cut(s) 349, 391
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 346, 388
BstMWI GCNNNNNNNGC 2 cut(s) 211, 461
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 128, 453
BstV1I GCAGC 3 cut(s) 467, 470, 473
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
Bsu36I CCTNAGG 1 cut(s) 320
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 4 cut(s) 286, 330, 423, 481
BveI ACCTGC 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 2 cut(s) 70, 446
CviJI RGCY 4 cut(s) 39, 124, 285, 464
CviKI_1 RGCY 4 cut(s) 39, 124, 285, 464
DdeI CTNAG 1 cut(s) 320
DpnI GATC 2 cut(s) 348, 390
DpnII GATC 2 cut(s) 346, 388
EaeI YGGCCR 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 134, 335
Eco81I CCTNAGG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 248
FaeI CATG 2 cut(s) 73, 449
FaqI GGGAC 1 cut(s) 259
FatI CATG 2 cut(s) 69, 445
Fnu4HI GCNGC 3 cut(s) 456, 459, 462
FokI GGATG 3 cut(s) 293, 337, 430
Fsp4HI GCNGC 3 cut(s) 456, 459, 462
FspBI CTAG 1 cut(s) 440
GluI GCNGC 3 cut(s) 456, 459, 462
HaeIII GGCC 1 cut(s) 39
HapII CCGG 2 cut(s) 40, 271
Hin1II CATG 2 cut(s) 73, 449
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HpaII CCGG 2 cut(s) 40, 271
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 364, 376
Hpy188I TCNGA 2 cut(s) 25, 354
Hpy188III TCNNGA 3 cut(s) 119, 392, 440
Hpy8I GTNNAC 2 cut(s) 364, 376
HpyAV CCTTC 2 cut(s) 67, 137
HpyCH4III ACNGT 2 cut(s) 179, 386
HpyCH4V TGCA 3 cut(s) 184, 246, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 461
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 2 cut(s) 73, 449
Kzo9I GATC 2 cut(s) 346, 388
LpnPI CCDG 7 cut(s) 53, 116, 173, 263, 284, 290, 465
Lsp1109I GCAGC 3 cut(s) 467, 470, 473
LweI GCATC 2 cut(s) 255, 345
MaeI CTAG 1 cut(s) 440
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 348, 390
MbiI CCGCTC 1 cut(s) 415
MboI GATC 2 cut(s) 346, 388
MboII GAAGA 5 cut(s) 41, 89, 112, 241, 341
MflI RGATCY 1 cut(s) 346
MluCI AATT 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 99, 388
Mph1103I ATGCAT 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 2 cut(s) 11, 371
MspI CCGG 2 cut(s) 40, 271
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 211, 461
NdeII GATC 2 cut(s) 346, 388
NlaIII CATG 2 cut(s) 73, 449
NlaIV GGNNCC 2 cut(s) 275, 399
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 147
PkrI GCNGC 3 cut(s) 457, 460, 463
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 275, 399
PspPI GGNCC 1 cut(s) 273
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 11, 371
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 3 cut(s) 456, 459, 462
Sau3AI GATC 2 cut(s) 346, 388
Sau96I GGNCC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 278
SetI ASST 5 cut(s) 126, 298, 339, 454, 466
SfaNI GCATC 2 cut(s) 255, 345
SfcI CTRYAG 2 cut(s) 128, 453
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 2 cut(s) 11, 371
SmlI CTYRAG 3 cut(s) 119, 230, 392
SmoI CTYRAG 3 cut(s) 119, 230, 392
Sse9I AATT 1 cut(s) 191
SsiI CCGC 2 cut(s) 214, 415
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 179, 386
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 191
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 3 cut(s) 455, 458, 461
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 7 cut(s) 17, 29, 42, 86, 102, 314, 462
TspGWI ACGGA 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 191
XbaI TCTAGA 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 440
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.