Rh4AG395200

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003486
Physical Location & Seq
Reverse (-)
70074530 .. 70076267
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG395200.1

Sequence Viewer

Length: 555 bp
ATGAATGTGGGAGCCAATCACAAAGCTGTGCATCATGAAGATGGCAAAAAGATCACCAGAGGGACTGACCTGGAGAGTATGACCATAGTTCAACGTGATGCTTTACTGGTTTTCCGAACCCTGTGTCACAGAATAGCTTCTTTCACCTTCCCCTCACTTTATTTGCACAAATTAATTTTGACTATATTTGAGGATTCTTTGTTGACAGGAAGGTTATCTCACCAGGCAAAAGCTTTGGCAGAGCCTTTTGATTATAGTGAATACATTGAACACCAAAAAAAGAAGAAGCTAGAAAAAGAATTTCTGGGACAGCGAATTACGTCATCCATGAAGAACATTCAACATTGCTCTGAGAATATCTCAAGGGATGCAAAATGCAGATCTAATATGGCTGTTGCGTCCCAGACTACTTCAATAAAGGGTTCATCTCTTCTGTGTCTTGTGAATGTGATTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAAAATAAAAACACTCAGTCTCTGGAAGGAGATGCTTCAGCTAAAGAGTCTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

184

Amino Acids

20.92

Weight (kDa)

9.19

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 515
AgsI TTSAA 4 cut(s) 92, 269, 341, 414
AjnI CCWGG 2 cut(s) 69, 222
AluBI AGCT 5 cut(s) 26, 137, 233, 289, 535
AluI AGCT 5 cut(s) 26, 137, 233, 289, 535
Alw26I GTCTC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 516
ApoI RAATTY 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AseI ATTAAT 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 136
AsuHPI GGTGA 3 cut(s) 46, 136, 212
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 71, 224
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 290
BglII AGATCT 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 71, 224
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 71, 224
BmsI GCATC 4 cut(s) 40, 88, 358, 516
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 2 cut(s) 71, 224
BseGI GGATG 2 cut(s) 323, 373
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 342, 523
BseNI ACTGG 1 cut(s) 111
BslFI GGGAC 3 cut(s) 76, 321, 385
BsmAI GTCTC 1 cut(s) 518
BsmFI GGGAC 3 cut(s) 76, 321, 385
Bsp143I GATC 2 cut(s) 51, 380
BspCNI CTCAG 2 cut(s) 343, 522
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 111
BssMI GATC 2 cut(s) 51, 380
Bst2UI CCWGG 2 cut(s) 71, 224
Bst6I CTCTTC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 351, 509
BstF5I GGATG 2 cut(s) 323, 373
BstKTI GATC 2 cut(s) 54, 383
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 2 cut(s) 51, 380
BstNI CCWGG 2 cut(s) 71, 224
BstSCI CCNGG 2 cut(s) 69, 222
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BtsCI GGATG 2 cut(s) 323, 373
CaiI CAGNNNCTG 1 cut(s) 516
CciI TCATGA 1 cut(s) 34
CseI GACGC 1 cut(s) 387
CviAII CATG 3 cut(s) 35, 328, 480
CviJI RGCY 8 cut(s) 14, 26, 137, 233, 244, 289, 392, 535
CviKI_1 RGCY 8 cut(s) 14, 26, 137, 233, 244, 289, 392, 535
DdeI CTNAG 2 cut(s) 351, 509
DpnI GATC 2 cut(s) 53, 382
DpnII GATC 2 cut(s) 51, 380
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 69, 222
FaeI CATG 3 cut(s) 38, 331, 483
FaiI YATR 8 cut(s) 36, 80, 86, 185, 255, 329, 389, 481
FaqI GGGAC 3 cut(s) 76, 321, 385
FatI CATG 3 cut(s) 34, 327, 479
FokI GGATG 2 cut(s) 310, 380
FspBI CTAG 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 92
HgaI GACGC 1 cut(s) 387
Hin1II CATG 3 cut(s) 38, 331, 483
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 3 cut(s) 194, 488, 541
HphI GGTGA 3 cut(s) 46, 136, 212
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 3 cut(s) 116, 352, 493
Hpy188III TCNNGA 2 cut(s) 35, 517
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 3 cut(s) 157, 204, 514
HpyCH4IV ACGT 2 cut(s) 94, 320
HpyCH4V TGCA 4 cut(s) 31, 166, 371, 378
HpyF3I CTNAG 2 cut(s) 351, 509
HpySE526I ACGT 2 cut(s) 94, 320
Hsp92II CATG 3 cut(s) 38, 331, 483
Kzo9I GATC 2 cut(s) 51, 380
LmnI GCTCC 1 cut(s) 11
LweI GCATC 4 cut(s) 40, 88, 358, 516
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 94, 320
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 53, 382
MboI GATC 2 cut(s) 51, 380
MboII GAAGA 4 cut(s) 50, 295, 343, 422
MflI RGATCY 1 cut(s) 380
MluCI AATT 4 cut(s) 170, 174, 299, 315
MlyI GAGTC 1 cut(s) 550
MnlI CCTC 3 cut(s) 53, 163, 184
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 2 cut(s) 173, 453
MslI CAYNNNNRTG 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 71, 224
MvaI CCWGG 2 cut(s) 71, 224
NdeII GATC 2 cut(s) 51, 380
NlaIII CATG 3 cut(s) 38, 331, 483
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 125
PagI TCATGA 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 194, 488
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
PshBI ATTAAT 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 69, 222
PspGI CCWGG 2 cut(s) 69, 222
PspN4I GGNNCC 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 516
PsuI RGATCY 1 cut(s) 380
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 2 cut(s) 173, 453
Sau3AI GATC 2 cut(s) 51, 380
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 2 cut(s) 71, 224
SfaNI GCATC 4 cut(s) 40, 88, 358, 516
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 4 cut(s) 170, 174, 299, 315
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 69, 222
TaiI ACGT 2 cut(s) 97, 323
TasI AATT 4 cut(s) 170, 174, 299, 315
TfiI GAWTC 2 cut(s) 194, 488
Tru1I TTAA 2 cut(s) 173, 453
Tru9I TTAA 2 cut(s) 173, 453
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 4 cut(s) 17, 51, 344, 414
VspI ATTAAT 1 cut(s) 173
XapI RAATTY 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.