Rh6DG240200

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003486
Physical Location & Seq
Reverse (-)
42734801 .. 42736321
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG240200.1

Sequence Viewer

Length: 585 bp
ATGGGCATGAAGGAAGATAACAATGAAGTCACTTTGAAGACGAGGATTTTATCTCTTGAGCTTCTGCACTTCAGTTTCGCCGTCCCCTATCATATTACAGTATGCAACTGGAATTTTTTTTTAGTGCTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGGTGAAATATGCATCTTCTTTCCTTTGATAGTTCTCCAGTCCCTGGATGGCTTGGATTTATCCATGAACCAAAAAATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACTGAACTTGTTTGAGCGGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGTTACGTCCCAGACTACTTCAATAAAGGCTGATTGGGAAAAGTCATGTGGAGAATCTGATAGAATAAAAACATTCAGTCTCTGGAAGGAGATGCTTCAGCTAAAGAGTGTTGATGTGAAAAGCAGGCAAGATGCAACCATTAACTTTGAGAAGGCAAAATCTCATAAGTCTATAGTGGAATCTGCCATATTTGAGGTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

194

Amino Acids

22.49

Weight (kDa)

5.99

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 21 - 109 1.7e-17 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AccBSI CCGCTC 1 cut(s) 337
AciI CCGC 2 cut(s) 136, 337
AclWI GGATC 2 cut(s) 276, 363
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 3 cut(s) 55, 257, 461
AfiI CCNNNNNNNGG 2 cut(s) 199, 247
AgsI TTSAA 3 cut(s) 37, 254, 402
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 2 cut(s) 61, 481
AluI AGCT 2 cut(s) 61, 481
Alw26I GTCTC 2 cut(s) 155, 464
AlwI GGATC 2 cut(s) 276, 363
AlwNI CAGNNNCTG 2 cut(s) 199, 462
ApoI RAATTY 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 44
BccI CCATC 2 cut(s) 197, 241
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 155, 464
BfmI CTRYAG 1 cut(s) 552
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 5 cut(s) 177, 267, 346, 462, 502
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 135, 167
BpmI CTGGAG 1 cut(s) 176
BpuEI CTTGAG 4 cut(s) 77, 137, 334, 335
BsaBI GATNNNNATC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 247
Bse1I ACTGG 2 cut(s) 113, 193
Bse21I CCTNAGG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 344
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 4 cut(s) 208, 252, 345, 361
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 2 cut(s) 199, 247
BseNI ACTGG 2 cut(s) 113, 193
BsgI GTGCAG 1 cut(s) 50
BslFI GGGAC 3 cut(s) 68, 181, 373
BslI CCNNNNNNNGG 2 cut(s) 199, 247
BsmAI GTCTC 2 cut(s) 155, 464
BsmFI GGGAC 3 cut(s) 68, 181, 373
Bsp143I GATC 3 cut(s) 268, 310, 368
BspACI CCGC 2 cut(s) 136, 337
BspPI GGATC 2 cut(s) 276, 363
BsrBI CCGCTC 1 cut(s) 337
BsrI ACTGG 2 cut(s) 113, 193
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 268, 310, 368
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 100, 308
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 4 cut(s) 208, 252, 345, 361
BstKTI GATC 3 cut(s) 271, 313, 371
BstMAI GTCTC 2 cut(s) 155, 464
BstMBI GATC 3 cut(s) 268, 310, 368
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 552
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 2 cut(s) 268, 368
BstYI RGATCY 2 cut(s) 268, 368
Bsu36I CCTNAGG 1 cut(s) 242
BtsCI GGATG 4 cut(s) 208, 252, 345, 361
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 506
CaiI CAGNNNCTG 2 cut(s) 199, 462
CviAII CATG 3 cut(s) 7, 220, 426
CviJI RGCY 5 cut(s) 61, 207, 380, 410, 481
CviKI_1 RGCY 5 cut(s) 61, 207, 380, 410, 481
DdeI CTNAG 1 cut(s) 242
DpnI GATC 3 cut(s) 270, 312, 370
DpnII GATC 3 cut(s) 268, 310, 368
Eco57I CTGAAG 3 cut(s) 55, 257, 461
Eco81I CCTNAGG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 170
FaeI CATG 3 cut(s) 10, 223, 429
FaqI GGGAC 3 cut(s) 68, 181, 373
FatI CATG 3 cut(s) 6, 219, 425
FokI GGATG 4 cut(s) 215, 259, 352, 368
GsuI CTGGAG 1 cut(s) 176
Hin1II CATG 3 cut(s) 10, 223, 429
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 2 cut(s) 434, 560
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 286, 298
Hpy188I TCNGA 2 cut(s) 276, 439
Hpy188III TCNNGA 3 cut(s) 56, 314, 463
Hpy8I GTNNAC 2 cut(s) 286, 298
HpyAV CCTTC 3 cut(s) 4, 460, 526
HpyCH4III ACNGT 2 cut(s) 100, 308
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 7 cut(s) 67, 105, 168, 264, 359, 366, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 3 cut(s) 10, 223, 429
Kzo9I GATC 3 cut(s) 268, 310, 368
LpnPI CCDG 7 cut(s) 94, 185, 206, 212, 404, 448, 490
LweI GCATC 5 cut(s) 177, 267, 346, 462, 502
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 2 cut(s) 28, 382
MalI GATC 3 cut(s) 270, 312, 370
MbiI CCGCTC 1 cut(s) 337
MboI GATC 3 cut(s) 268, 310, 368
MboII GAAGA 4 cut(s) 26, 49, 163, 263
MflI RGATCY 2 cut(s) 268, 368
MluCI AATT 1 cut(s) 112
MnlI CCTC 3 cut(s) 36, 310, 568
Mph1103I ATGCAT 1 cut(s) 170
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 3 cut(s) 268, 310, 368
NlaIII CATG 3 cut(s) 10, 223, 429
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 170
PfeI GAWTC 2 cut(s) 434, 560
PflMI CCANNNNNTGG 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PstNI CAGNNNCTG 2 cut(s) 199, 462
PsuI RGATCY 2 cut(s) 268, 368
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 522
Sau3AI GATC 3 cut(s) 268, 310, 368
ScrFI CCNGG 1 cut(s) 200
SetI ASST 5 cut(s) 63, 261, 389, 483, 579
SfaNI GCATC 5 cut(s) 177, 267, 346, 462, 502
SfcI CTRYAG 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 4 cut(s) 56, 152, 314, 349
SmoI CTYRAG 4 cut(s) 56, 152, 314, 349
Sse9I AATT 1 cut(s) 112
SsiI CCGC 2 cut(s) 136, 337
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 100, 308
TaiI ACGT 1 cut(s) 389
TasI AATT 1 cut(s) 112
TfiI GAWTC 2 cut(s) 434, 560
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 4 cut(s) 23, 39, 236, 356
TspRI CASTG 1 cut(s) 327
Van91I CCANNNNNTGG 1 cut(s) 199
XapI RAATTY 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 2 cut(s) 200, 574
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.