Rmu_sc0010558.1_g000004

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010558.1
OG0003486
Physical Location & Seq
Forward (+)
20309 .. 22685
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010558.1_g000004.1.cds

Sequence Viewer

Length: 291 bp
atggttgaaaaggtttgcaaggatcttcagatgcttgttgacatatttgtgaactatgactgtgatcttgaggcaccgaacttgtttgagcagttgtcgtggcctgcggacgtgcagtctactgttgactcgttgaaggaaggcgaagaagatggtggctgcggtgagtccaccttgatacaaaagtatgttaaagctgaaaccttctttaaattctacaggaaagggtctcttttgaatcttgatgagattacctctgtccaaaatgcggtgaagagttcgacaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

4.33

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 119
AciI CCGC 3 cut(s) 107, 162, 269
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 3 cut(s) 8, 136, 238
AhdI GACNNNNNGTC 1 cut(s) 115
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 30
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 176, 283
BaeI ACNNNNGTAYC 2 cut(s) 170, 203
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpuEI CTTGAG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 234
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 22, 64
BspACI CCGC 3 cut(s) 107, 162, 269
BspANI GGCC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 234
BssMI GATC 2 cut(s) 22, 64
Bst4CI ACNGT 2 cut(s) 62, 124
Bst6I CTCTTC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 25, 67
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 22, 64
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 103
BtrI CACGTC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 105
CviJI RGCY 3 cut(s) 103, 159, 197
CviKI_1 RGCY 3 cut(s) 103, 159, 197
DpnI GATC 2 cut(s) 24, 66
DpnII GATC 2 cut(s) 22, 64
DraI TTTAAA 1 cut(s) 211
DriI GACNNNNNGTC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 269
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 11
FaiI YATR 3 cut(s) 44, 57, 189
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 103
HincII GTYRAC 2 cut(s) 40, 127
HindII GTYRAC 2 cut(s) 40, 127
HinfI GANTC 3 cut(s) 128, 167, 238
HphI GGTGA 2 cut(s) 176, 283
Hpy166II GTNNAC 5 cut(s) 40, 52, 120, 127, 171
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 68, 242
Hpy8I GTNNAC 5 cut(s) 40, 52, 120, 127, 171
HpyAV CCTTC 3 cut(s) 130, 134, 214
HpyCH4III ACNGT 2 cut(s) 62, 124
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 18, 115
HpySE526I ACGT 1 cut(s) 111
Kzo9I GATC 2 cut(s) 22, 64
LpnPI CCDG 2 cut(s) 117, 205
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 21
MaeII ACGT 1 cut(s) 111
MalI GATC 2 cut(s) 24, 66
MboI GATC 2 cut(s) 22, 64
MboII GAAGA 4 cut(s) 17, 158, 161, 286
MflI RGATCY 1 cut(s) 22
MluCI AATT 2 cut(s) 212, 285
MlyI GAGTC 2 cut(s) 122, 176
MnlI CCTC 2 cut(s) 64, 265
MseI TTAA 2 cut(s) 192, 210
MslI CAYNNNNRTG 1 cut(s) 47
NdeII GATC 2 cut(s) 22, 64
NlaIV GGNNCC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 2 cut(s) 122, 175
PpsI GAGTC 2 cut(s) 122, 175
PspN4I GGNNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 192, 210
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 2 cut(s) 22, 64
SchI GAGTC 2 cut(s) 122, 176
SetI ASST 6 cut(s) 15, 114, 176, 199, 206, 257
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 212, 285
SsiI CCGC 3 cut(s) 107, 162, 269
TaaI ACNGT 2 cut(s) 62, 124
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 281
TasI AATT 2 cut(s) 212, 285
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 192, 210
Tru9I TTAA 2 cut(s) 192, 210
TseI GCWGC 1 cut(s) 159
XapI RAATTY 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.