Rh6DG310200

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003486
Physical Location & Seq
Forward (+)
51103761 .. 51117896
14136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG310200.1

Sequence Viewer

Length: 486 bp
ATGGAAACTTTCGTGAATGCTTATGAGGCTATTGTAGACATAATATGGCAAAAAGATAACCAAATGGGCATGAAGGAAGATAACAATGAAGTCACTTTGAAGACGAGGATTTTATCTCTTGAGCTTCTACAGGGTTTGTTGGAAGGACTTCAGTTTCTCCGTTCCTTATCATATTACAGTATGCAACTGGAATTTTTTTTAGTGCTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGGTGAAATATGCATCTTCTTTCCTTTGATAGTTCTCCGGTCCCTGGATGGCTTGGATTTACCTATGAACCAAAAAATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGTAAGGATCTTCAGATGCTTGTTGACATATATGTGAACTATGACTGTGATCTTGAGGCACCAAACTTGTTTGAGCGGATGAATATCTCAAGGGATGCAAAATTCAGATCCAATATGGCTGTTGCGCCCCAGACTATACTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

161

Amino Acids

18.84

Weight (kDa)

4.83

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 55 - 136 7.5e-20 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AccBSI CCGCTC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 36
AciI CCGC 2 cut(s) 214, 415
AclWI GGATC 2 cut(s) 354, 441
AcsI RAATTY 2 cut(s) 191, 440
AcuI CTGAAG 2 cut(s) 134, 335
AfiI CCNNNNNNNGG 2 cut(s) 277, 325
AgsI TTSAA 3 cut(s) 100, 332, 482
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 2 cut(s) 354, 441
ApoI RAATTY 2 cut(s) 191, 440
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 320
BanI GGYRCC 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 107
BccI CCATC 2 cut(s) 275, 319
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 275, 399
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 3 cut(s) 255, 345, 424
BpiI GAAGAC 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 213, 245
BpuEI CTTGAG 4 cut(s) 140, 215, 412, 413
BsaBI GATNNNNATC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 325
Bse1I ACTGG 1 cut(s) 192
Bse21I CCTNAGG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 4 cut(s) 286, 330, 423, 439
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 277, 325
BseNI ACTGG 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 277, 325
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 346, 388, 446
BspACI CCGC 2 cut(s) 214, 415
BspLI GGNNCC 2 cut(s) 275, 399
BspPI GGATC 2 cut(s) 354, 441
BspT107I GGYRCC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 415
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 3 cut(s) 346, 388, 446
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 179, 386
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 4 cut(s) 286, 330, 423, 439
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 3 cut(s) 349, 391, 449
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 3 cut(s) 346, 388, 446
BstMWI GCNNNNNNNGC 2 cut(s) 26, 211
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 2 cut(s) 346, 446
BstYI RGATCY 2 cut(s) 346, 446
Bsu36I CCTNAGG 1 cut(s) 320
BtsCI GGATG 4 cut(s) 286, 330, 423, 439
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 1 cut(s) 70
CviJI RGCY 4 cut(s) 29, 124, 285, 458
CviKI_1 RGCY 4 cut(s) 29, 124, 285, 458
DdeI CTNAG 1 cut(s) 320
DpnI GATC 3 cut(s) 348, 390, 448
DpnII GATC 3 cut(s) 346, 388, 446
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 134, 335
Eco81I CCTNAGG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 248
FaeI CATG 1 cut(s) 73
FaqI GGGAC 1 cut(s) 259
FatI CATG 1 cut(s) 69
FblI GTMKAC 1 cut(s) 36
FokI GGATG 4 cut(s) 293, 337, 430, 446
GlaI GCGC 1 cut(s) 465
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 466
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 3 cut(s) 37, 364, 376
Hpy188I TCNGA 2 cut(s) 354, 446
Hpy188III TCNNGA 3 cut(s) 13, 119, 392
Hpy8I GTNNAC 3 cut(s) 37, 364, 376
HpyAV CCTTC 2 cut(s) 67, 137
HpyCH4III ACNGT 2 cut(s) 179, 386
HpyCH4V TGCA 3 cut(s) 184, 246, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 211
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 464
Kzo9I GATC 3 cut(s) 346, 388, 446
LpnPI CCDG 6 cut(s) 116, 173, 263, 284, 290, 482
LweI GCATC 3 cut(s) 255, 345, 424
MaeIII GTNAC 1 cut(s) 91
MalI GATC 3 cut(s) 348, 390, 448
MbiI CCGCTC 1 cut(s) 415
MboI GATC 3 cut(s) 346, 388, 446
MboII GAAGA 4 cut(s) 89, 112, 241, 341
MflI RGATCY 2 cut(s) 346, 446
MluCI AATT 2 cut(s) 191, 440
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 3 cut(s) 19, 99, 388
Mph1103I ATGCAT 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 371
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 26, 211
NdeII GATC 3 cut(s) 346, 388, 446
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 2 cut(s) 275, 399
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 248
PctI GAATGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 275, 399
PspPI GGNCC 1 cut(s) 273
PsuI RGATCY 2 cut(s) 346, 446
RseI CAYNNNNRTG 1 cut(s) 371
Sau3AI GATC 3 cut(s) 346, 388, 446
Sau96I GGNCC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 278
SetI ASST 3 cut(s) 126, 298, 339
SfaNI GCATC 3 cut(s) 255, 345, 424
SfcI CTRYAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 4 cut(s) 119, 230, 392, 427
SmoI CTYRAG 4 cut(s) 119, 230, 392, 427
Sse9I AATT 2 cut(s) 191, 440
SsiI CCGC 2 cut(s) 214, 415
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 179, 386
TasI AATT 2 cut(s) 191, 440
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 4 cut(s) 86, 102, 314, 434
TspGWI ACGGA 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 2 cut(s) 191, 440
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.