RchiOBHm_Chr4g0419091

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003486
Physical Location & Seq
Forward (+)
44613414 .. 44613972
559 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38903

Sequence Viewer

Length: 216 bp
ATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACCGAACTTGTTTGAGCAGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGCTGCGTCCCAGACTACTTCAATAAAGGGTTCATCTCTTCAGTGTCTTGGGAAAAGTCATGTGGAGAATCAGATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

71

Amino Acids

7.94

Weight (kDa)

4.96

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 1 - 28 1.1e-06 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AclWI GGATC 2 cut(s) 30, 117
AcuI CTGAAG 2 cut(s) 11, 158
AgsI TTSAA 2 cut(s) 8, 156
AlwI GGATC 2 cut(s) 30, 117
ApeKI GCWGC 2 cut(s) 134, 137
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 121, 124
BisI GCNGC 2 cut(s) 135, 138
BlsI GCNGC 2 cut(s) 136, 139
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 2 cut(s) 21, 100
BpuEI CTTGAG 2 cut(s) 88, 89
BsaBI GATNNNNATC 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 98
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 98
BseXI GCAGC 2 cut(s) 121, 124
BshNI GGYRCC 1 cut(s) 73
BslFI GGGAC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 127
Bsp143I GATC 3 cut(s) 22, 64, 122
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 30, 117
BspT107I GGYRCC 1 cut(s) 73
BssMI GATC 3 cut(s) 22, 64, 122
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 25, 67, 125
BstMBI GATC 3 cut(s) 22, 64, 122
BstV1I GCAGC 2 cut(s) 121, 124
BstX2I RGATCY 2 cut(s) 22, 122
BstYI RGATCY 2 cut(s) 22, 122
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 182
CseI GACGC 1 cut(s) 129
CviAII CATG 1 cut(s) 194
CviJI RGCY 1 cut(s) 134
CviKI_1 RGCY 1 cut(s) 134
DpnI GATC 3 cut(s) 24, 66, 124
DpnII GATC 3 cut(s) 22, 64, 122
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 11, 158
FaeI CATG 1 cut(s) 197
FaiI YATR 4 cut(s) 44, 57, 131, 195
FaqI GGGAC 1 cut(s) 127
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 135, 138
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 135, 138
GluI GCNGC 2 cut(s) 135, 138
HgaI GACGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 197
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 40, 52
Hpy188I TCNGA 2 cut(s) 30, 207
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 40, 52
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 18, 113, 120
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 3 cut(s) 22, 64, 122
LpnPI CCDG 1 cut(s) 158
Lsp1109I GCAGC 2 cut(s) 121, 124
LweI GCATC 2 cut(s) 21, 100
MalI GATC 3 cut(s) 24, 66, 124
MboI GATC 3 cut(s) 22, 64, 122
MboII GAAGA 2 cut(s) 17, 164
MflI RGATCY 2 cut(s) 22, 122
MnlI CCTC 1 cut(s) 64
MslI CAYNNNNRTG 1 cut(s) 47
NdeII GATC 3 cut(s) 22, 64, 122
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 2 cut(s) 136, 139
PspN4I GGNNCC 1 cut(s) 75
PsuI RGATCY 2 cut(s) 22, 122
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 2 cut(s) 135, 138
Sau3AI GATC 3 cut(s) 22, 64, 122
SetI ASST 1 cut(s) 15
SfaNI GCATC 2 cut(s) 21, 100
SgeI CNNG 8 cut(s) 31, 47, 80, 94, 117, 157, 194, 206
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 68, 103
SmoI CTYRAG 2 cut(s) 68, 103
TaaI ACNGT 1 cut(s) 62
TfiI GAWTC 1 cut(s) 202
TscAI CASTG 1 cut(s) 182
TseI GCWGC 2 cut(s) 134, 137
TspDTI ATGAA 2 cut(s) 110, 156
TspRI CASTG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.