Rh6DG467200

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003486
Physical Location & Seq
Reverse (-)
63425991 .. 63427734
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG467200.1

Sequence Viewer

Length: 429 bp
ATGGCCATGAATGCGGGAGCCAATCACAAAGCTGTGCATCATGAAGATGGCAAAAAGATCACCAGAGGGACTGACCTGGAGAGAAGGTTATCTCACCAGGCAAAAGCTTTGGTAGAGCCTTTTGATTATAGTGAATACATTGAACACCAAAAAAAGAAGAAGCTAGAAAAAGAATTTCTGGGACAGCGAATTACGTCATCCAAGAAGAACATTCAACATTGCTCTGAGAATATCTCAAGGGATGCAAAATGCAGATCTAATATGGCTGTTGCGTCCCAGACTACTTCAATAAAGGGTTCATCTCTTCTGTGTCTTGTGAATGTGCTTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAAAATAAAAACACTCAGTCTCTGGAAGGAGATGCTTCAGCTAAAGAGTCTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

142

Amino Acids

16.12

Weight (kDa)

9.39

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 389
AgsI TTSAA 3 cut(s) 143, 215, 288
AjnI CCWGG 2 cut(s) 75, 96
AluBI AGCT 4 cut(s) 32, 107, 163, 409
AluI AGCT 4 cut(s) 32, 107, 163, 409
Alw26I GTCTC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 390
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 52, 86
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 77, 98
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 164
BglII AGATCT 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 77, 98
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 77, 98
BmsI GCATC 3 cut(s) 46, 232, 390
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 77, 98
BseGI GGATG 2 cut(s) 197, 247
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 216, 397
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 3 cut(s) 82, 195, 259
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 3 cut(s) 82, 195, 259
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 57, 254
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 217, 396
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 217
BssMI GATC 2 cut(s) 57, 254
Bst2UI CCWGG 2 cut(s) 77, 98
Bst6I CTCTTC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 225, 383
BstF5I GGATG 2 cut(s) 197, 247
BstKTI GATC 2 cut(s) 60, 257
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 2 cut(s) 57, 254
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 77, 98
BstSCI CCNGG 2 cut(s) 75, 96
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 197, 247
CaiI CAGNNNCTG 1 cut(s) 390
CciI TCATGA 1 cut(s) 40
CseI GACGC 1 cut(s) 261
CviAII CATG 3 cut(s) 7, 41, 354
CviJI RGCY 8 cut(s) 5, 20, 32, 107, 118, 163, 266, 409
CviKI_1 RGCY 8 cut(s) 5, 20, 32, 107, 118, 163, 266, 409
DdeI CTNAG 2 cut(s) 225, 383
DpnI GATC 2 cut(s) 59, 256
DpnII GATC 2 cut(s) 57, 254
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 75, 96
FaeI CATG 3 cut(s) 10, 44, 357
FaiI YATR 5 cut(s) 8, 42, 129, 263, 355
FaqI GGGAC 3 cut(s) 82, 195, 259
FatI CATG 3 cut(s) 6, 40, 353
FauI CCCGC 1 cut(s) 7
FokI GGATG 2 cut(s) 184, 254
FspBI CTAG 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 10, 44, 357
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 2 cut(s) 362, 415
HphI GGTGA 2 cut(s) 52, 86
Hpy188I TCNGA 2 cut(s) 226, 367
Hpy188III TCNNGA 2 cut(s) 41, 391
HpyAV CCTTC 2 cut(s) 78, 388
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 37, 245, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 225, 383
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 3 cut(s) 10, 44, 357
Kzo9I GATC 2 cut(s) 57, 254
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 8 cut(s) 62, 76, 83, 89, 110, 164, 290, 376
LweI GCATC 3 cut(s) 46, 232, 390
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 194
MalI GATC 2 cut(s) 59, 256
MboI GATC 2 cut(s) 57, 254
MboII GAAGA 4 cut(s) 56, 169, 217, 296
MflI RGATCY 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 173, 189
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 45
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 77, 98
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 2 cut(s) 77, 98
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 57, 254
NlaIII CATG 3 cut(s) 10, 44, 357
NlaIV GGNNCC 1 cut(s) 19
PagI TCATGA 1 cut(s) 40
PctI GAATGC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 362
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 75, 96
PspGI CCWGG 2 cut(s) 75, 96
PspN4I GGNNCC 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 390
PsuI RGATCY 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 327
Sau3AI GATC 2 cut(s) 57, 254
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 77, 98
SetI ASST 7 cut(s) 34, 78, 89, 109, 165, 197, 411
SfaNI GCATC 3 cut(s) 46, 232, 390
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 2 cut(s) 173, 189
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 75, 96
TaiI ACGT 1 cut(s) 197
TasI AATT 2 cut(s) 173, 189
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TspDTI ATGAA 3 cut(s) 23, 57, 288
XapI RAATTY 1 cut(s) 173
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.