RLG00000033475

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003486
Physical Location & Seq
Reverse (-)
27768705 .. 27769383
679 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033475

Sequence Viewer

Length: 312 bp
ATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACCGAACTTGTTTGAGCGGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGTTGTGTCCCAGACTACTTCAATAAAGGGTTCATCTCTTCTGTGTCTTGTGAATGTGCTTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACACTCAGTCTCTGGAAGGAGATGCTTCAGCTAAAGAGTGTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

104

Amino Acids

11.76

Weight (kDa)

7.57

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 2 - 33 6.6e-08 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 106
AciI CCGC 1 cut(s) 106
AclWI GGATC 2 cut(s) 45, 132
AcuI CTGAAG 2 cut(s) 26, 272
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 23, 171
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 2 cut(s) 45, 132
AlwNI CAGNNNCTG 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 11
BanI GGYRCC 1 cut(s) 88
BccI CCATC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 3 cut(s) 36, 115, 273
BpuEI CTTGAG 2 cut(s) 103, 104
BsaBI GATNNNNATC 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse21I CCTNAGG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 113
BseGI GGATG 3 cut(s) 21, 114, 130
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 88
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 142
Bsp143I GATC 3 cut(s) 37, 79, 137
BspACI CCGC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 2 cut(s) 45, 132
BspT107I GGYRCC 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 106
BssMI GATC 3 cut(s) 37, 79, 137
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 11, 266
BstF5I GGATG 3 cut(s) 21, 114, 130
BstKTI GATC 3 cut(s) 40, 82, 140
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 3 cut(s) 37, 79, 137
BstX2I RGATCY 2 cut(s) 37, 137
BstYI RGATCY 2 cut(s) 37, 137
Bsu36I CCTNAGG 1 cut(s) 11
BtsCI GGATG 3 cut(s) 21, 114, 130
CaiI CAGNNNCTG 1 cut(s) 273
CviAII CATG 1 cut(s) 237
CviJI RGCY 2 cut(s) 149, 292
CviKI_1 RGCY 2 cut(s) 149, 292
DdeI CTNAG 2 cut(s) 11, 266
DpnI GATC 3 cut(s) 39, 81, 139
DpnII GATC 3 cut(s) 37, 79, 137
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 26, 272
Eco81I CCTNAGG 1 cut(s) 11
FaeI CATG 1 cut(s) 240
FaiI YATR 4 cut(s) 59, 72, 146, 238
FaqI GGGAC 1 cut(s) 142
FatI CATG 1 cut(s) 236
FokI GGATG 3 cut(s) 28, 121, 137
Hin1II CATG 1 cut(s) 240
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 55, 67
Hpy188I TCNGA 2 cut(s) 45, 250
Hpy188III TCNNGA 2 cut(s) 83, 274
Hpy8I GTNNAC 2 cut(s) 55, 67
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 33, 128, 135
HpyF3I CTNAG 2 cut(s) 11, 266
Hsp92II CATG 1 cut(s) 240
Kzo9I GATC 3 cut(s) 37, 79, 137
LpnPI CCDG 2 cut(s) 173, 259
LweI GCATC 3 cut(s) 36, 115, 273
MalI GATC 3 cut(s) 39, 81, 139
MbiI CCGCTC 1 cut(s) 106
MboI GATC 3 cut(s) 37, 79, 137
MboII GAAGA 2 cut(s) 32, 179
MflI RGATCY 2 cut(s) 37, 137
MnlI CCTC 1 cut(s) 79
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 62
NdeII GATC 3 cut(s) 37, 79, 137
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 273
PsuI RGATCY 2 cut(s) 37, 137
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 3 cut(s) 37, 79, 137
SetI ASST 2 cut(s) 30, 294
SfaNI GCATC 3 cut(s) 36, 115, 273
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 83, 118
SmoI CTYRAG 2 cut(s) 83, 118
SsiI CCGC 1 cut(s) 106
TaaI ACNGT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TspDTI ATGAA 2 cut(s) 125, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.