Rroxscaffold_2G00145580

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003486
Physical Location & Seq
Forward (+)
83453757 .. 83454357
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145580.1

Sequence Viewer

Length: 348 bp
ATGAACCAGAAAATGAGTGTTCTTAGGATGTTAGAAAAAGTTTGCAAGGATCCTCAGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACCGAACTTGTTTGAGCGGATGAATATCTCAAGGGACCCAAAATGCAGATCCGAATATGGCTGCTGCATCCCAGACTACTTCAATAAAGGGTTCATCTCTTCAGGTAAGTTTAACGATTTACTCCTTTCTCAGTTTTGGCTAATTCATCATCTGCTTTCTTGCTGCTATATATTCATTGATGGTAGCACAGGTTGCTGGATGACCCCTTTTTCCTTGAACTTGCCAGTGTCTTGTGAATGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

115

Amino Acids

13.3

Weight (kDa)

5.2

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 2 - 37 3.8e-11 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 1 cut(s) 118
AclWI GGATC 3 cut(s) 44, 57, 144
AcuI CTGAAG 1 cut(s) 186
AgsI TTSAA 2 cut(s) 184, 319
AlwI GGATC 3 cut(s) 44, 57, 144
ApeKI GCWGC 3 cut(s) 162, 165, 264
AspS9I GGNCC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 3 cut(s) 149, 152, 251
BccI CCATC 1 cut(s) 275
BisI GCNGC 3 cut(s) 163, 166, 265
BlsI GCNGC 3 cut(s) 164, 167, 266
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 4 cut(s) 51, 102, 137, 138
BmsI GCATC 2 cut(s) 48, 177
BpuEI CTTGAG 2 cut(s) 115, 116
BsaBI GATNNNNATC 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 125
BseGI GGATG 4 cut(s) 33, 126, 168, 306
BseJI GATNNNNATC 1 cut(s) 125
BseMII CTCAG 2 cut(s) 68, 245
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 149, 152, 251
BshNI GGYRCC 1 cut(s) 100
BslFI GGGAC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 49, 91, 149
BspACI CCGC 1 cut(s) 118
BspCNI CTCAG 2 cut(s) 67, 244
BspLI GGNNCC 4 cut(s) 51, 102, 137, 138
BspPI GGATC 3 cut(s) 44, 57, 144
BspT107I GGYRCC 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 326
BssMI GATC 3 cut(s) 49, 91, 149
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 23, 54, 231
BstF5I GGATG 4 cut(s) 33, 126, 168, 306
BstKTI GATC 3 cut(s) 52, 94, 152
BstMBI GATC 3 cut(s) 49, 91, 149
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 149, 152, 251
BstX2I RGATCY 2 cut(s) 49, 149
BstYI RGATCY 2 cut(s) 49, 149
BtsCI GGATG 4 cut(s) 33, 126, 168, 306
BtsIMutI CAGTG 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 136
CviJI RGCY 2 cut(s) 162, 241
CviKI_1 RGCY 2 cut(s) 162, 241
DdeI CTNAG 3 cut(s) 23, 54, 231
DpnI GATC 3 cut(s) 51, 93, 151
DpnII GATC 3 cut(s) 49, 91, 149
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 136
FaiI YATR 5 cut(s) 71, 84, 159, 270, 272
FaqI GGGAC 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 163, 166, 265
FokI GGATG 4 cut(s) 40, 133, 155, 313
Fsp4HI GCNGC 3 cut(s) 163, 166, 265
GluI GCNGC 3 cut(s) 163, 166, 265
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 67, 79
Hpy188I TCNGA 2 cut(s) 57, 154
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 67, 79
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 45, 147, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 3 cut(s) 23, 54, 231
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 49, 91, 149
LpnPI CCDG 6 cut(s) 20, 186, 189, 276, 283, 339
Lsp1109I GCAGC 3 cut(s) 149, 152, 251
LweI GCATC 2 cut(s) 48, 177
MalI GATC 3 cut(s) 51, 93, 151
MbiI CCGCTC 1 cut(s) 118
MboI GATC 3 cut(s) 49, 91, 149
MboII GAAGA 1 cut(s) 192
MflI RGATCY 2 cut(s) 49, 149
MluCI AATT 1 cut(s) 243
MnlI CCTC 2 cut(s) 63, 91
MseI TTAA 2 cut(s) 213, 346
MslI CAYNNNNRTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeII GATC 3 cut(s) 49, 91, 149
NlaIV GGNNCC 4 cut(s) 51, 102, 137, 138
PkrI GCNGC 3 cut(s) 164, 167, 266
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspN4I GGNNCC 4 cut(s) 51, 102, 137, 138
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 2 cut(s) 49, 149
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 213, 346
SatI GCNGC 3 cut(s) 163, 166, 265
Sau3AI GATC 3 cut(s) 49, 91, 149
Sau96I GGNCC 1 cut(s) 136
SetI ASST 2 cut(s) 208, 295
SfaNI GCATC 2 cut(s) 48, 177
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 95, 130
SmoI CTYRAG 2 cut(s) 95, 130
Sse9I AATT 1 cut(s) 243
SsiI CCGC 1 cut(s) 118
TaaI ACNGT 1 cut(s) 89
TasI AATT 1 cut(s) 243
Tru1I TTAA 2 cut(s) 213, 346
Tru9I TTAA 2 cut(s) 213, 346
TscAI CASTG 1 cut(s) 333
TseI GCWGC 3 cut(s) 162, 165, 264
TspDTI ATGAA 5 cut(s) 17, 137, 184, 236, 265
TspRI CASTG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.