Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003486

Physical Location & Seq

Genomic Coordinates Forward (+)

9182187 .. 9183456

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0068800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCTCGGGTGCAAATCCGTTGTCAAGAAGTTACAAAAGGAGTTTCAATGGATTTGCTGCGAAGCTCACTGACCTTGAAAGACAAAAGATTGCTAACAGGAACGAGGTGGTCTCTGTCTTTCCAAGCACAACTTTCCGACTTCAAACAACAAGATTGTGGGACTTCAACGTTCAAAATGAGAAAATCATCGAAATGCCACAGTAGAGTGATTGGTGTCCTTGACACAGGAATCTGGCCCGAATCGGGTAGCTTCAAAGATGAAGGTTTCAGTCCGGCTCCAAGCAGTGGAAAGGTGCTTGTGCAGGTGGAAAAAACTTCACTTGCAACAACAAGATCAGCAGAGCTCGGTTTTATGAATCAGCGAAAGGGTATCCTGAGTGCTTTTGACGATGCTATTGCTGATGGAGTTGACATCATTACTGTTTCACTTACTCACATACTTACACTACGTTTGAATAAAGATCCGACAGCAATAGGTGCTTTTCTTGCAACCGAGAAAGGGATACTAACAACTAAAACTGCAGGCAACGATGGTTATAGAGCTGGTTCTGTAACAAGTGTAGCACCATGGTTGCTAACTACAGTTGCAGCAAGAGATCGTTGGATAATTGACAAAGTTGTTTATGACAATGGAAGCACAATGGTCGGGGAATCAATAAACTCCTTCACATTAAATGGAACAATGAAGGGAAAGGTTGTCTTATCTGATGGTTACATTGGAGGTGATGTGGCTTATGAAGCTGGAGCAGTAGGTGAATTTGCTTATGGATCTGGACATATCAGTCCTGTCCAAGTAATAGATCCAGGGCTGGTTTATGAAGCTTCTAAGGAAGGTTACATAAAGCTGCTCTGCTCGGTCTTGGGAGAGGCCGAGGTTAGACTTATATCAGGAGATAACAGCACTTGCTCTACACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

306

Amino Acids

32.78

Weight (kDa)

7.61

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003486)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130521 RchiOBHm_Chr2g0138841 RchiOBHm_Chr4g0419091 RchiOBHm_Chr4g0442741 RchiOBHm_Chr6g0280591
rosa_laevigata	RLG00000008535 RLG00000033475
rosa_multiflora	Rmu_sc0010558.1_g000004 Rmu_sc0013296.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145580 Rroxscaffold_3G00269240
rosa_rugosa	Rorug01G0360800 Rorug02G0176000 Rorug04G0057500 Rorug06G0068800
rosa_samantha	Rh2AG322900 Rh2BG351800 Rh4AG395200 Rh4CG201000 Rh4DG402100 Rh6BG000800 Rh6BG000900 Rh6CG324500 Rh6CG416900 Rh6DG240200 Rh6DG310200 Rh6DG467200 Rh7CG021900 Rh7CG319300 Rh7CG507600 Rh7CG507700 Rh7DG255600 Rh7DG475300
rosa_wichuraiana	Rw2G030120 Rw2G032750 Rw3G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
AasI	GACNNNNNNGTC	1 cut(s)	783
Acc36I	ACCTGC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	287
AclI	AACGTT	1 cut(s)	170
AclWI	GGATC	3 cut(s)	458, 778, 797
AcsI	RAATTY	1 cut(s)	758
AfiI	CCNNNNNNNGG	3 cut(s)	245, 287, 501
AgsI	TTSAA	7 cut(s)	48, 79, 145, 168, 175, 256, 457
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	7 cut(s)	66, 252, 346, 545, 743, 824, 847
AluI	AGCT	7 cut(s)	66, 252, 346, 545, 743, 824, 847
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	458, 778, 797
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	2 cut(s)	236, 870
ApeKI	GCWGC	3 cut(s)	58, 590, 847
ApoI	RAATTY	1 cut(s)	758
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	737, 767
AvaI	CYCGRG	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	45, 602, 834
BccI	CCATC	3 cut(s)	398, 527, 704
BcgI	CGANNNNNNTGC	4 cut(s)	380, 414, 628, 662
BciT130I	CCWGG	1 cut(s)	807
BciVI	GTATCC	2 cut(s)	383, 498
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	919
BfmI	CTRYAG	2 cut(s)	522, 582
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	2 cut(s)	383, 498
BisI	GCNGC	3 cut(s)	59, 591, 848
BlsI	GCNGC	3 cut(s)	60, 592, 849
Bme1390I	CCNGG	1 cut(s)	807
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	807
BmsI	GCATC	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpmI	CTGGAG	1 cut(s)	765
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	569, 806, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 287, 501
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	3 cut(s)	569, 806, 873
BseLI	CCNNNNNNNGG	3 cut(s)	245, 287, 501
BseMII	CTCAG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	45, 602, 834
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	238, 872
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	3 cut(s)	245, 287, 501
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	238, 872
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	5 cut(s)	335, 463, 598, 770, 802
Bsp19I	CCATGG	1 cut(s)	569
BspANI	GGCC	2 cut(s)	238, 872
BspCNI	CTCAG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	3 cut(s)	458, 778, 797
BspTNI	GGTCTC	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	569, 806, 873
BssMI	GATC	5 cut(s)	335, 463, 598, 770, 802
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	3 cut(s)	203, 424, 586
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	377, 828
BstDSI	CCRYGG	1 cut(s)	569
BstKTI	GATC	5 cut(s)	338, 466, 601, 773, 805
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	5 cut(s)	335, 463, 598, 770, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 488, 740
BstNI	CCWGG	1 cut(s)	807
BstSCI	CCNGG	1 cut(s)	805
BstSFI	CTRYAG	2 cut(s)	522, 582
BstV1I	GCAGC	3 cut(s)	45, 602, 834
BstX2I	RGATCY	3 cut(s)	463, 770, 802
BstYI	RGATCY	3 cut(s)	463, 770, 802
BsuI	GTATCC	2 cut(s)	383, 498
BsuRI	GGCC	2 cut(s)	238, 872
BtgI	CCRYGG	1 cut(s)	569
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	68, 292
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	237
CviAII	CATG	1 cut(s)	570
DdeI	CTNAG	2 cut(s)	377, 828
DpnI	GATC	5 cut(s)	337, 465, 600, 772, 804
DpnII	GATC	5 cut(s)	335, 463, 598, 770, 802
DrdI	GACNNNNNNGTC	1 cut(s)	783
DseDI	GACNNNNNNGTC	1 cut(s)	783
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	1 cut(s)	573
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 686, 718
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	1 cut(s)	569
Fnu4HI	GCNGC	3 cut(s)	59, 591, 848
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	3 cut(s)	59, 591, 848
FspBI	CTAG	1 cut(s)	919
GluI	GCNGC	3 cut(s)	59, 591, 848
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	2 cut(s)	238, 872
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	573
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	822
HinfI	GANTC	4 cut(s)	231, 242, 358, 653
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	737, 767
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	139, 468, 709
Hpy188III	TCNNGA	4 cut(s)	26, 376, 774, 891
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	4 cut(s)	257, 676, 682, 827
HpyCH4III	ACNGT	3 cut(s)	203, 424, 586
HpyCH4IV	ACGT	2 cut(s)	170, 451
HpyCH4V	TGCA	6 cut(s)	13, 304, 326, 491, 524, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 488, 740
HpyF3I	CTNAG	2 cut(s)	377, 828
HpySE526I	ACGT	2 cut(s)	170, 451
Hsp92II	CATG	1 cut(s)	573
Kzo9I	GATC	5 cut(s)	335, 463, 598, 770, 802
LmnI	GCTCC	2 cut(s)	283, 746
Lsp1109I	GCAGC	3 cut(s)	45, 602, 834
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	919
MaeII	ACGT	2 cut(s)	170, 451
MaeIII	GTNAC	4 cut(s)	31, 553, 713, 836
MalI	GATC	5 cut(s)	337, 465, 600, 772, 804
MboI	GATC	5 cut(s)	335, 463, 598, 770, 802
MflI	RGATCY	3 cut(s)	463, 770, 802
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	2 cut(s)	609, 758
MmeI	TCCRAC	3 cut(s)	162, 491, 584
MnlI	CCTC	4 cut(s)	99, 716, 862, 868
MseI	TTAA	1 cut(s)	674
MslI	CAYNNNNRTG	1 cut(s)	193
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	3 cut(s)	479, 488, 740
NcoI	CCATGG	1 cut(s)	569
NdeII	GATC	5 cut(s)	335, 463, 598, 770, 802
NlaIII	CATG	1 cut(s)	573
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	898
PaqCI	CACCTGC	1 cut(s)	295
PfeI	GAWTC	4 cut(s)	231, 242, 358, 653
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	60, 592, 849
Psp124BI	GAGCTC	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	3 cut(s)	463, 770, 802
RseI	CAYNNNNRTG	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	3 cut(s)	59, 591, 848
Sau3AI	GATC	5 cut(s)	335, 463, 598, 770, 802
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	2 cut(s)	522, 582
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	609, 758
SspMI	CTAG	1 cut(s)	919
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	3 cut(s)	203, 424, 586
TaiI	ACGT	2 cut(s)	173, 454
TaqI	TCGA	1 cut(s)	191
TaqII	GACCGA	1 cut(s)	847
TasI	AATT	2 cut(s)	609, 758
TfiI	GAWTC	4 cut(s)	231, 242, 358, 653
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TscAI	CASTG	2 cut(s)	75, 292
TseI	GCWGC	3 cut(s)	58, 590, 847
TspDTI	ATGAA	5 cut(s)	276, 371, 701, 753, 834
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	2 cut(s)	75, 292
Van91I	CCANNNNNTGG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	758
XspI	CTAG	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.