Rh7DG255600

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003486
Physical Location & Seq
Reverse (-)
26702931 .. 26704776
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG255600.1

Sequence Viewer

Length: 441 bp
ATGCGATTTTCTTTGGTTAGTTACATTCAGAATGATAATACTATGCTGGAGAACAAGCAAAAAGAGCTGAAGGGATACATAGCTTACTTCAGTCTATGGAAACTTTTACGAGGATTTTATCTCTTGAGCTTCTGCAGGGTTTGTTGGAAGGACTTCAGTTTCGCCGTCCTCTATCATATTATAGTATGCAACTGGAATTTTTTTTTAGTGCTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGGTGAAATATGCATCTTCTTTCCTTTGATAGTTCTCCGGTCCCTGGATGGCTTGGATTTACCCATGAACCAAAAAATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACTGAACTTGTTTGAGCGGATGGTATGCTTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

146

Amino Acids

17.53

Weight (kDa)

8.15

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 31 - 137 2.5e-18 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 421
AciI CCGC 2 cut(s) 220, 421
AclWI GGATC 1 cut(s) 360
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 4 cut(s) 73, 89, 139, 341
AfiI CCNNNNNNNGG 2 cut(s) 283, 331
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 3 cut(s) 67, 83, 129
AluI AGCT 3 cut(s) 67, 83, 129
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 360
ApoI RAATTY 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 279
AxyI CCTNAGG 1 cut(s) 326
BccI CCATC 3 cut(s) 281, 325, 418
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 284
BciVI GTATCC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 133
BfuI GTATCC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 261, 351
BplI GAGNNNNNCTC 2 cut(s) 219, 251
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 3 cut(s) 145, 221, 419
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 331
Bse1I ACTGG 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 3 cut(s) 292, 336, 429
BseLI CCNNNNNNNGG 2 cut(s) 283, 331
BseNI ACTGG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 283, 331
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 352, 394
BspACI CCGC 2 cut(s) 220, 421
BspLI GGNNCC 1 cut(s) 281
BspMAI CTGCAG 1 cut(s) 137
BspPI GGATC 1 cut(s) 360
BsrBI CCGCTC 1 cut(s) 421
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 352, 394
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 3 cut(s) 292, 336, 429
BstKTI GATC 2 cut(s) 355, 397
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 352, 394
BstMWI GCNNNNNNNGC 2 cut(s) 64, 217
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu36I CCTNAGG 1 cut(s) 326
BsuI GTATCC 1 cut(s) 68
BtsCI GGATG 3 cut(s) 292, 336, 429
BtsIMutI CAGTG 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 279
CviAII CATG 1 cut(s) 304
CviJI RGCY 4 cut(s) 67, 83, 129, 291
CviKI_1 RGCY 4 cut(s) 67, 83, 129, 291
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 354, 396
DpnII GATC 2 cut(s) 352, 394
Eco47I GGWCC 1 cut(s) 279
Eco57I CTGAAG 4 cut(s) 73, 89, 139, 341
Eco81I CCTNAGG 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 254
FaeI CATG 1 cut(s) 307
FaqI GGGAC 1 cut(s) 265
FatI CATG 1 cut(s) 303
FokI GGATG 3 cut(s) 299, 343, 436
GsuI CTGGAG 1 cut(s) 68
HapII CCGG 1 cut(s) 277
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 370, 382
Hpy188I TCNGA 2 cut(s) 30, 360
Hpy188III TCNNGA 2 cut(s) 124, 398
Hpy8I GTNNAC 2 cut(s) 370, 382
HpyAV CCTTC 2 cut(s) 64, 142
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 4 cut(s) 135, 189, 252, 348
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 217
HpyF3I CTNAG 1 cut(s) 326
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 2 cut(s) 352, 394
LpnPI CCDG 6 cut(s) 32, 121, 178, 269, 290, 296
LweI GCATC 2 cut(s) 261, 351
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 354, 396
MbiI CCGCTC 1 cut(s) 421
MboI GATC 2 cut(s) 352, 394
MboII GAAGA 2 cut(s) 247, 347
MflI RGATCY 1 cut(s) 352
MluCI AATT 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 3 cut(s) 104, 179, 394
Mph1103I ATGCAT 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 64, 217
NdeII GATC 2 cut(s) 352, 394
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 377
Sau3AI GATC 2 cut(s) 352, 394
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 284
SetI ASST 4 cut(s) 69, 85, 131, 345
SfaNI GCATC 2 cut(s) 261, 351
SfcI CTRYAG 1 cut(s) 133
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 3 cut(s) 124, 236, 398
SmoI CTYRAG 3 cut(s) 124, 236, 398
Sse9I AATT 1 cut(s) 196
SsiI CCGC 2 cut(s) 220, 421
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 392
TasI AATT 1 cut(s) 196
TscAI CASTG 1 cut(s) 411
TspDTI ATGAA 1 cut(s) 320
TspRI CASTG 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.