Rw2G032750

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003486
Physical Location & Seq
Forward (+)
53798157 .. 53798848
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032750.1

Sequence Viewer

Length: 324 bp
ATGAACCAAAAAATGAGTGTTCTCAGGATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCATGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACCGAACTTGTTTGAGCAGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGCTGCGTCCCAGACTACTTCAATAAAGGGTTCATCTCTTCAGTGTCTTGTAAATGTGCTTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACACTCAGTCTTTGGAAGGAGATCCCTCAGCTGAAGAGTATGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

107

Amino Acids

12.22

Weight (kDa)

7.6

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 2 - 37 1.3e-08 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AclWI GGATC 3 cut(s) 57, 144, 289
AcuI CTGAAG 2 cut(s) 38, 185
AgsI TTSAA 2 cut(s) 35, 183
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
AlwI GGATC 3 cut(s) 57, 144, 289
ApeKI GCWGC 2 cut(s) 161, 164
BanI GGYRCC 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 148, 151
BccI CCATC 1 cut(s) 22
BisI GCNGC 2 cut(s) 162, 165
BlsI GCNGC 2 cut(s) 163, 166
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 2 cut(s) 48, 127
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 115, 116
BsaBI GATNNNNATC 1 cut(s) 125
Bse8I GATNNNNATC 1 cut(s) 125
BseGI GGATG 2 cut(s) 33, 142
BseJI GATNNNNATC 1 cut(s) 125
BseMII CTCAG 3 cut(s) 37, 292, 314
BseXI GCAGC 2 cut(s) 148, 151
BshNI GGYRCC 1 cut(s) 100
BslFI GGGAC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 49, 91, 149, 294
BspCNI CTCAG 3 cut(s) 36, 291, 313
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 3 cut(s) 57, 144, 289
BspT107I GGYRCC 1 cut(s) 100
BssMI GATC 4 cut(s) 49, 91, 149, 294
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 204, 302
BstDEI CTNAG 3 cut(s) 23, 278, 300
BstF5I GGATG 2 cut(s) 33, 142
BstKTI GATC 4 cut(s) 52, 94, 152, 297
BstMBI GATC 4 cut(s) 49, 91, 149, 294
BstNSI RCATGY 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 148, 151
BstX2I RGATCY 3 cut(s) 49, 149, 294
BstYI RGATCY 3 cut(s) 49, 149, 294
BtsCI GGATG 2 cut(s) 33, 142
BtsIMutI CAGTG 1 cut(s) 209
CseI GACGC 1 cut(s) 156
CviAII CATG 2 cut(s) 62, 249
CviJI RGCY 2 cut(s) 161, 304
CviKI_1 RGCY 2 cut(s) 161, 304
DdeI CTNAG 3 cut(s) 23, 278, 300
DpnI GATC 4 cut(s) 51, 93, 151, 296
DpnII GATC 4 cut(s) 49, 91, 149, 294
Eam1104I CTCTTC 2 cut(s) 204, 302
EarI CTCTTC 2 cut(s) 204, 302
Eco57I CTGAAG 2 cut(s) 38, 185
EcoT22I ATGCAT 1 cut(s) 63
FaeI CATG 2 cut(s) 65, 252
FaiI YATR 6 cut(s) 63, 71, 84, 158, 250, 314
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 61, 248
Fnu4HI GCNGC 2 cut(s) 162, 165
FokI GGATG 2 cut(s) 40, 149
Fsp4HI GCNGC 2 cut(s) 162, 165
GluI GCNGC 2 cut(s) 162, 165
HgaI GACGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 65, 252
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 67, 79
Hpy188I TCNGA 2 cut(s) 57, 262
Hpy188III TCNNGA 2 cut(s) 25, 95
Hpy8I GTNNAC 2 cut(s) 67, 79
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 45, 61, 140, 147
HpyF3I CTNAG 3 cut(s) 23, 278, 300
Hsp92II CATG 2 cut(s) 65, 252
Kzo9I GATC 4 cut(s) 49, 91, 149, 294
LpnPI CCDG 2 cut(s) 10, 185
Lsp1109I GCAGC 2 cut(s) 148, 151
LweI GCATC 2 cut(s) 48, 127
MalI GATC 4 cut(s) 51, 93, 151, 296
MboI GATC 4 cut(s) 49, 91, 149, 294
MboII GAAGA 3 cut(s) 44, 191, 319
MflI RGATCY 3 cut(s) 49, 149, 294
MnlI CCTC 2 cut(s) 91, 309
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 304
NdeII GATC 4 cut(s) 49, 91, 149, 294
NlaIII CATG 2 cut(s) 65, 252
NlaIV GGNNCC 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 63
NspI RCATGY 1 cut(s) 65
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 163, 166
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 3 cut(s) 49, 149, 294
PvuII CAGCTG 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 162, 165
Sau3AI GATC 4 cut(s) 49, 91, 149, 294
SetI ASST 2 cut(s) 42, 306
SfaNI GCATC 2 cut(s) 48, 127
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 95, 130
SmoI CTYRAG 2 cut(s) 95, 130
TaaI ACNGT 1 cut(s) 89
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 209
TseI GCWGC 2 cut(s) 161, 164
TspDTI ATGAA 3 cut(s) 17, 137, 183
TspRI CASTG 1 cut(s) 209
XceI RCATGY 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.