Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003486

Physical Location & Seq

Genomic Coordinates Reverse (-)

34380728 .. 34381418

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG319300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTTAATGTGATCACTATGATTTTGAATTTCTTTTTCTGGTCGTCTAATGAGGTGCGGGCTTGCAGGATGGTTGAAAAGGTTTGCAAGGATCTTCTGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACCGAACTTGTTTGAGCGGATGTCTCTGGAAGGAGATGCTTCAGCTAAAGAGTCTGTTGATGTGAAAATCAGGCAAGATGCAACCACTAACTTTGAGAAGGCAAAAGCTCAGAAGTCTACAGTGGAAGCTGCCATATCTGAGGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

4.63

Isoelectric Point (pI)

27.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec7-like_HUS	PF12783	21 - 51	3.9e-06	Mon2/Sec7/BIG1-like, HUS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003486)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130521 RchiOBHm_Chr2g0138841 RchiOBHm_Chr4g0419091 RchiOBHm_Chr4g0442741 RchiOBHm_Chr6g0280591
rosa_laevigata	RLG00000008535 RLG00000033475
rosa_multiflora	Rmu_sc0010558.1_g000004 Rmu_sc0013296.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145580 Rroxscaffold_3G00269240
rosa_rugosa	Rorug01G0360800 Rorug02G0176000 Rorug04G0057500 Rorug06G0068800
rosa_samantha	Rh2AG322900 Rh2BG351800 Rh4AG395200 Rh4CG201000 Rh4DG402100 Rh6BG000800 Rh6BG000900 Rh6CG324500 Rh6CG416900 Rh6DG240200 Rh6DG310200 Rh6DG467200 Rh7CG021900 Rh7CG319300 Rh7CG507600 Rh7CG507700 Rh7DG255600 Rh7DG475300
rosa_wichuraiana	Rw2G030120 Rw2G032750 Rw3G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	260
AciI	CCGC	2 cut(s)	58, 160
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	28, 77
AluBI	AGCT	3 cut(s)	188, 251, 272
AluI	AGCT	3 cut(s)	188, 251, 272
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	3 cut(s)	90, 169, 211
BpuEI	CTTGAG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	75, 168
BseMII	CTCAG	2 cut(s)	266, 273
BseXI	GCAGC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	12, 91, 133
BspACI	CCGC	2 cut(s)	58, 160
BspCNI	CTCAG	2 cut(s)	265, 274
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	142
BsrBI	CCGCTC	1 cut(s)	160
BssMI	GATC	3 cut(s)	12, 91, 133
Bst4CI	ACNGT	2 cut(s)	131, 265
BstC8I	GCNNGC	2 cut(s)	60, 64
BstDEI	CTNAG	2 cut(s)	252, 282
BstF5I	GGATG	2 cut(s)	75, 168
BstKTI	GATC	3 cut(s)	15, 94, 136
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	12, 91, 133
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	75, 168
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	60, 64
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviJI	RGCY	4 cut(s)	62, 188, 251, 272
CviKI_1	RGCY	4 cut(s)	62, 188, 251, 272
DdeI	CTNAG	2 cut(s)	252, 282
DpnI	GATC	3 cut(s)	14, 93, 135
DpnII	GATC	3 cut(s)	12, 91, 133
Eco57I	CTGAAG	1 cut(s)	168
FaiI	YATR	4 cut(s)	20, 113, 126, 278
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	2 cut(s)	82, 175
Fsp4HI	GCNGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	109, 121, 261
Hpy188I	TCNGA	3 cut(s)	99, 255, 283
Hpy188III	TCNNGA	2 cut(s)	137, 170
Hpy8I	GTNNAC	3 cut(s)	109, 121, 261
HpyAV	CCTTC	2 cut(s)	167, 235
HpyCH4III	ACNGT	2 cut(s)	131, 265
HpyCH4V	TGCA	3 cut(s)	66, 87, 224
HpyF3I	CTNAG	2 cut(s)	252, 282
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 91, 133
LpnPI	CCDG	4 cut(s)	25, 52, 155, 199
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	3 cut(s)	90, 169, 211
MalI	GATC	3 cut(s)	14, 93, 135
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	3 cut(s)	12, 91, 133
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	3 cut(s)	46, 133, 277
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	116
NdeII	GATC	3 cut(s)	12, 91, 133
NlaIV	GGNNCC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	3 cut(s)	12, 91, 133
SchI	GAGTC	1 cut(s)	203
SetI	ASST	6 cut(s)	57, 84, 190, 253, 274, 288
SfaNI	GCATC	3 cut(s)	90, 169, 211
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	58, 160
TaaI	ACNGT	2 cut(s)	131, 265
TasI	AATT	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	272
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.