Rh6BG000800

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003486
Physical Location & Seq
Forward (+)
149355 .. 151380
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG000800.1

Sequence Viewer

Length: 633 bp
ATGGAAACTTTCGTGAATGCTTATGAGGCTATTGTAGACATAATATGGCAAAAAGATAACCAGATGGGCATGAAGGAAGATAACAATGAAGTCACTTTGAAGACGAGGATTTTATCTCTTGAGCTTCTGCAGGGTTTGTTGGAAGGAGTTGTGCTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGGTGAAATATGCATCTTCTTTCCTTTGATAGTTCTCCGGTCCCTGGATGGCTTGGATTTACCCATGAACCAAAAAATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACCGAACTTGTTTGAGCGGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGTTGCGTCCCAGACTACCTCAATAAAGGGTTCATCTCTTCTGTGTCTTGTGAATGTGCTTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACACTCAGTCTCTGGAAGGAGATCGATGCTTCAGCTAAAGAGTCTGTTGATGTGAAAATCAGGCAAGATGCAACCACTAACTTTGAGAAGGCTGCCATATCTAAGGTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

210

Amino Acids

23.85

Weight (kDa)

5.06

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 51 - 119 4.4e-17 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 36
AciI CCGC 2 cut(s) 163, 364
AclWI GGATC 2 cut(s) 303, 390
AcuI CTGAAG 2 cut(s) 284, 534
AfiI CCNNNNNNNGG 2 cut(s) 226, 274
AgsI TTSAA 2 cut(s) 100, 281
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 2 cut(s) 124, 554
AluI AGCT 2 cut(s) 124, 554
Alw26I GTCTC 2 cut(s) 182, 533
AlwI GGATC 2 cut(s) 303, 390
AlwNI CAGNNNCTG 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 222
AxyI CCTNAGG 1 cut(s) 269
BanI GGYRCC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 598
BccI CCATC 3 cut(s) 58, 224, 268
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 2 cut(s) 182, 533
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 224, 348
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 5 cut(s) 204, 294, 373, 535, 577
BpiI GAAGAC 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 162, 194
BpuEI CTTGAG 4 cut(s) 140, 164, 361, 362
Bsa29I ATCGAT 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 274
Bse21I CCTNAGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 4 cut(s) 235, 279, 372, 388
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 2 cut(s) 226, 274
BseMII CTCAG 1 cut(s) 538
BseXI GCAGC 1 cut(s) 598
BshNI GGYRCC 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 543
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 2 cut(s) 208, 400
BslI CCNNNNNNNGG 2 cut(s) 226, 274
BsmAI GTCTC 2 cut(s) 182, 533
BsmFI GGGAC 2 cut(s) 208, 400
BsmI GAATGC 1 cut(s) 22
Bsp143I GATC 4 cut(s) 295, 337, 395, 540
BspACI CCGC 2 cut(s) 163, 364
BspCNI CTCAG 1 cut(s) 537
BspDI ATCGAT 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 224, 348
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 303, 390
BspT107I GGYRCC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 4 cut(s) 295, 337, 395, 540
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 450
BstDEI CTNAG 3 cut(s) 269, 524, 621
BstF5I GGATG 4 cut(s) 235, 279, 372, 388
BstKTI GATC 4 cut(s) 298, 340, 398, 543
BstMAI GTCTC 2 cut(s) 182, 533
BstMBI GATC 4 cut(s) 295, 337, 395, 540
BstMWI GCNNNNNNNGC 2 cut(s) 26, 160
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 598
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 2 cut(s) 295, 395
BstYI RGATCY 2 cut(s) 295, 395
Bsu15I ATCGAT 1 cut(s) 543
Bsu36I CCTNAGG 1 cut(s) 269
BsuTUI ATCGAT 1 cut(s) 543
BtsCI GGATG 4 cut(s) 235, 279, 372, 388
CaiI CAGNNNCTG 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 222
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 1 cut(s) 402
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 3 cut(s) 70, 247, 495
CviJI RGCY 6 cut(s) 29, 124, 234, 407, 554, 611
CviKI_1 RGCY 6 cut(s) 29, 124, 234, 407, 554, 611
DdeI CTNAG 3 cut(s) 269, 524, 621
DpnI GATC 4 cut(s) 297, 339, 397, 542
DpnII GATC 4 cut(s) 295, 337, 395, 540
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 284, 534
Eco81I CCTNAGG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 197
FaeI CATG 3 cut(s) 73, 250, 498
FaqI GGGAC 2 cut(s) 208, 400
FatI CATG 3 cut(s) 69, 246, 494
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 612
FokI GGATG 4 cut(s) 242, 286, 379, 395
Fsp4HI GCNGC 1 cut(s) 612
GluI GCNGC 1 cut(s) 612
HapII CCGG 1 cut(s) 220
HgaI GACGC 1 cut(s) 402
Hin1II CATG 3 cut(s) 73, 250, 498
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 503, 560
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 3 cut(s) 37, 313, 325
Hpy188I TCNGA 2 cut(s) 303, 508
Hpy188III TCNNGA 4 cut(s) 13, 119, 341, 532
Hpy8I GTNNAC 3 cut(s) 37, 313, 325
HpyAV CCTTC 4 cut(s) 67, 137, 529, 601
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 6 cut(s) 130, 195, 291, 386, 393, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 160
HpyF3I CTNAG 3 cut(s) 269, 524, 621
Hsp92II CATG 3 cut(s) 73, 250, 498
Kzo9I GATC 4 cut(s) 295, 337, 395, 540
LpnPI CCDG 8 cut(s) 74, 116, 212, 233, 239, 431, 517, 565
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 5 cut(s) 204, 294, 373, 535, 577
MaeIII GTNAC 1 cut(s) 91
MalI GATC 4 cut(s) 297, 339, 397, 542
MbiI CCGCTC 1 cut(s) 364
MboI GATC 4 cut(s) 295, 337, 395, 540
MboII GAAGA 5 cut(s) 89, 112, 190, 290, 437
MflI RGATCY 2 cut(s) 295, 395
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 4 cut(s) 19, 99, 337, 436
Mph1103I ATGCAT 1 cut(s) 197
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 26, 160
NdeII GATC 4 cut(s) 295, 337, 395, 540
NlaIII CATG 3 cut(s) 73, 250, 498
NlaIV GGNNCC 2 cut(s) 224, 348
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 197
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 613
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 224, 348
PspPI GGNCC 1 cut(s) 222
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 531
PsuI RGATCY 2 cut(s) 295, 395
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 4 cut(s) 295, 337, 395, 540
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 1 cut(s) 227
SetI ASST 5 cut(s) 126, 288, 428, 556, 627
SfaNI GCATC 5 cut(s) 204, 294, 373, 535, 577
SfcI CTRYAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 4 cut(s) 119, 179, 341, 376
SmoI CTYRAG 4 cut(s) 119, 179, 341, 376
SsiI CCGC 2 cut(s) 163, 364
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 543
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 5 cut(s) 86, 102, 263, 383, 429
VpaK11BI GGWCC 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.