Rh2BG351800

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003486
Physical Location & Seq
Reverse (-)
48110802 .. 48113173
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG351800.1

Sequence Viewer

Length: 747 bp
ATGCGATTTTCTTTGGTTAGTTACCTTCAGTATGATAATACTATGCTGAAGAACAAGCAAAAAGAATGGCAAAAAGATAACCAGATGGGCATGAAGGAAGATAACAATGAAGTCACTTTGAAGACGAGGATTTTATCTGTTGAACTTCTGCAGGGTTTGTTGGAAGGACTTCAGTTTCACCGTCCCCTATCATATTACAGTATGCAACTGGAATTTTTTTTAGTGCTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGGTGAAATATGCATCTTCTTTCCTTTGATAGTTCTCCGGTCCCTGGATGGCTTGGATTTACCCATGAACCAAAAAATGATTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTATGAACTATGACTGTGATCTTGAGGCACTGAACTTGTTTGAGCGGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGTTGCGTCCCAGACTACTTCAATAAAGGGTTCATCTCTTCTGTGTCTTGTGAACGTGCTTAAATCACTTGTAGATTGGAAAAAGTCATGCGGAGAATCAGATAGAATAAAAACATTCAGTCTCTGGAAGGAGATGCTTCAGCTAAAGAGTGTTGACGTGAAAAGCAGGCAAGATGCAACCATTAACTTTGAGAAGGCAAAAGCTCATAAGTCTCTACAGTGGAATCTGCCATATTTGAGGTGGAATAAAGTGATGTTGTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

248

Amino Acids

29.24

Weight (kDa)

9.12

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 42 - 142 5.9e-20 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 436
AciI CCGC 3 cut(s) 235, 436, 570
AclWI GGATC 2 cut(s) 375, 462
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 5 cut(s) 11, 68, 155, 356, 602
AfiI CCNNNNNNNGG 2 cut(s) 298, 346
AgsI TTSAA 4 cut(s) 121, 143, 353, 501
AjiI CACGTC 1 cut(s) 637
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 2 cut(s) 622, 683
AluI AGCT 2 cut(s) 622, 683
Alw26I GTCTC 3 cut(s) 254, 605, 696
AlwI GGATC 2 cut(s) 375, 462
AlwNI CAGNNNCTG 1 cut(s) 603
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 170, 269
AvaII GGWCC 1 cut(s) 294
AxyI CCTNAGG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 128
BccI CCATC 3 cut(s) 79, 296, 340
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 254, 605, 696
BfmI CTRYAG 2 cut(s) 149, 695
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 294
BmgBI CACGTC 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 5 cut(s) 276, 366, 445, 603, 643
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpuEI CTTGAG 3 cut(s) 236, 433, 434
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 346
Bse1I ACTGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 4 cut(s) 307, 351, 444, 460
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 298, 346
BseNI ACTGG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 3 cut(s) 168, 280, 472
BslI CCNNNNNNNGG 2 cut(s) 298, 346
BsmAI GTCTC 3 cut(s) 254, 605, 696
BsmFI GGGAC 3 cut(s) 168, 280, 472
Bsp143I GATC 3 cut(s) 367, 409, 467
BspACI CCGC 3 cut(s) 235, 436, 570
BspLI GGNNCC 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 153
BspPI GGATC 2 cut(s) 375, 462
BsrBI CCGCTC 1 cut(s) 436
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 367, 409, 467
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 4 cut(s) 182, 200, 407, 699
Bst6I CTCTTC 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 1 cut(s) 341
BstF5I GGATG 4 cut(s) 307, 351, 444, 460
BstKTI GATC 3 cut(s) 370, 412, 470
BstMAI GTCTC 3 cut(s) 254, 605, 696
BstMBI GATC 3 cut(s) 367, 409, 467
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 2 cut(s) 149, 695
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 2 cut(s) 367, 467
BstYI RGATCY 2 cut(s) 367, 467
Bsu36I CCTNAGG 1 cut(s) 341
BtrI CACGTC 1 cut(s) 637
BtsCI GGATG 4 cut(s) 307, 351, 444, 460
BtsIMutI CAGTG 2 cut(s) 419, 704
Cac8I GCNNGC 1 cut(s) 647
CaiI CAGNNNCTG 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 294
CseI GACGC 1 cut(s) 474
CviAII CATG 3 cut(s) 91, 319, 567
CviJI RGCY 4 cut(s) 306, 479, 622, 683
CviKI_1 RGCY 4 cut(s) 306, 479, 622, 683
DdeI CTNAG 1 cut(s) 341
DpnI GATC 3 cut(s) 369, 411, 469
DpnII GATC 3 cut(s) 367, 409, 467
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 294
Eco57I CTGAAG 5 cut(s) 11, 68, 155, 356, 602
Eco81I CCTNAGG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 269
FaeI CATG 3 cut(s) 94, 322, 570
FaqI GGGAC 3 cut(s) 168, 280, 472
FatI CATG 3 cut(s) 90, 318, 566
FokI GGATG 4 cut(s) 314, 358, 451, 467
HapII CCGG 1 cut(s) 292
HgaI GACGC 1 cut(s) 474
Hin1II CATG 3 cut(s) 94, 322, 570
HincII GTYRAC 2 cut(s) 385, 634
HindII GTYRAC 2 cut(s) 385, 634
HinfI GANTC 2 cut(s) 575, 703
HpaII CCGG 1 cut(s) 292
HphI GGTGA 2 cut(s) 170, 269
Hpy166II GTNNAC 3 cut(s) 385, 532, 634
Hpy188I TCNGA 2 cut(s) 375, 580
Hpy188III TCNNGA 2 cut(s) 413, 604
Hpy8I GTNNAC 3 cut(s) 385, 532, 634
HpyAV CCTTC 5 cut(s) 35, 88, 158, 601, 667
HpyCH4III ACNGT 4 cut(s) 182, 200, 407, 699
HpyCH4IV ACGT 2 cut(s) 534, 636
HpyCH4V TGCA 7 cut(s) 151, 205, 267, 363, 458, 465, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 2 cut(s) 534, 636
Hsp92II CATG 3 cut(s) 94, 322, 570
Kzo9I GATC 3 cut(s) 367, 409, 467
LpnPI CCDG 9 cut(s) 95, 137, 194, 284, 305, 311, 503, 589, 631
LweI GCATC 5 cut(s) 276, 366, 445, 603, 643
MaeII ACGT 2 cut(s) 534, 636
MaeIII GTNAC 2 cut(s) 20, 112
MalI GATC 3 cut(s) 369, 411, 469
MbiI CCGCTC 1 cut(s) 436
MboI GATC 3 cut(s) 367, 409, 467
MboII GAAGA 6 cut(s) 61, 110, 133, 262, 362, 509
MflI RGATCY 2 cut(s) 367, 467
MluCI AATT 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 120, 409, 711
Mph1103I ATGCAT 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 2 cut(s) 540, 663
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 3 cut(s) 367, 409, 467
NlaIII CATG 3 cut(s) 94, 322, 570
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 575, 703
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 294
PstI CTGCAG 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 603
PsuI RGATCY 2 cut(s) 367, 467
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 540, 663
Sau3AI GATC 3 cut(s) 367, 409, 467
Sau96I GGNCC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 299
SetI ASST 7 cut(s) 27, 360, 537, 624, 639, 685, 722
SfaNI GCATC 5 cut(s) 276, 366, 445, 603, 643
SfcI CTRYAG 2 cut(s) 149, 695
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 3 cut(s) 251, 413, 448
SmoI CTYRAG 3 cut(s) 251, 413, 448
Sse9I AATT 1 cut(s) 212
SsiI CCGC 3 cut(s) 235, 436, 570
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 4 cut(s) 182, 200, 407, 699
TaiI ACGT 2 cut(s) 537, 639
TasI AATT 1 cut(s) 212
TfiI GAWTC 2 cut(s) 575, 703
Tru1I TTAA 2 cut(s) 540, 663
Tru9I TTAA 2 cut(s) 540, 663
TscAI CASTG 2 cut(s) 426, 704
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 6 cut(s) 107, 123, 335, 410, 455, 501
TspRI CASTG 2 cut(s) 426, 704
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 717
XmnI GAANNNNTTC 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.