Rh6BG000900

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003486
Physical Location & Seq
Forward (+)
211032 .. 211961
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG000900.1

Sequence Viewer

Length: 483 bp
ATGAGATTTTTGCTTCTGATCATTAGTTTCCTTCCTGCAGTATGCAACTGGAATTTTTTTTTAGTGCTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGGTGAAATATGCATCTTCTTTCCTTTGATAGTTCTCCGGTCCCTGGATGGCTTGGATTTACCCATGAACCAAAAAATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACCGAACTTGTTTGAGCGGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGTTGCGTCCCAGACTACCTCAATAAAGGGTTCATCTCTTCTGTGTCTTGTGAATGTGCTTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACACTCAGTCTCTGGAAGGAGATGCTTCAGCTAAAGAGTCTGTTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

160

Amino Acids

18.46

Weight (kDa)

8.49

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 17 - 90 1.7e-18 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 277
AciI CCGC 2 cut(s) 76, 277
AclWI GGATC 2 cut(s) 216, 303
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 197, 443
AfiI CCNNNNNNNGG 2 cut(s) 139, 187
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
Alw26I GTCTC 2 cut(s) 95, 446
AlwI GGATC 2 cut(s) 216, 303
AlwNI CAGNNNCTG 1 cut(s) 444
ApoI RAATTY 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 135
AxyI CCTNAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 259
BccI CCATC 2 cut(s) 137, 181
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 95, 446
BfmI CTRYAG 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 137, 261
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 4 cut(s) 117, 207, 286, 444
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpuEI CTTGAG 3 cut(s) 77, 274, 275
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 187
Bse1I ACTGG 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 4 cut(s) 148, 192, 285, 301
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 139, 187
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 2 cut(s) 121, 313
BslI CCNNNNNNNGG 2 cut(s) 139, 187
BsmAI GTCTC 2 cut(s) 95, 446
BsmFI GGGAC 2 cut(s) 121, 313
Bsp143I GATC 4 cut(s) 18, 208, 250, 308
BspACI CCGC 2 cut(s) 76, 277
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 137, 261
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 2 cut(s) 216, 303
BspT107I GGYRCC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 277
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 4 cut(s) 18, 208, 250, 308
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 182, 437
BstF5I GGATG 4 cut(s) 148, 192, 285, 301
BstKTI GATC 4 cut(s) 21, 211, 253, 311
BstMAI GTCTC 2 cut(s) 95, 446
BstMBI GATC 4 cut(s) 18, 208, 250, 308
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 36
BstX2I RGATCY 2 cut(s) 208, 308
BstYI RGATCY 2 cut(s) 208, 308
Bsu36I CCTNAGG 1 cut(s) 182
BtsCI GGATG 4 cut(s) 148, 192, 285, 301
CaiI CAGNNNCTG 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 315
CviAII CATG 2 cut(s) 160, 408
CviJI RGCY 3 cut(s) 147, 320, 463
CviKI_1 RGCY 3 cut(s) 147, 320, 463
DdeI CTNAG 2 cut(s) 182, 437
DpnI GATC 4 cut(s) 20, 210, 252, 310
DpnII GATC 4 cut(s) 18, 208, 250, 308
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 197, 443
Eco81I CCTNAGG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 110
FaeI CATG 2 cut(s) 163, 411
FaiI YATR 7 cut(s) 43, 106, 161, 230, 243, 317, 409
FaqI GGGAC 2 cut(s) 121, 313
FatI CATG 2 cut(s) 159, 407
FbaI TGATCA 1 cut(s) 18
FokI GGATG 4 cut(s) 155, 199, 292, 308
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 315
Hin1II CATG 2 cut(s) 163, 411
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 416, 469
HpaII CCGG 1 cut(s) 133
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 226, 238
Hpy188I TCNGA 3 cut(s) 18, 216, 421
Hpy188III TCNNGA 2 cut(s) 254, 445
Hpy8I GTNNAC 2 cut(s) 226, 238
HpyAV CCTTC 2 cut(s) 41, 442
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 6 cut(s) 38, 45, 108, 204, 299, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 182, 437
Hsp92II CATG 2 cut(s) 163, 411
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 18, 208, 250, 308
LpnPI CCDG 7 cut(s) 34, 48, 125, 146, 152, 344, 430
LweI GCATC 4 cut(s) 117, 207, 286, 444
MalI GATC 4 cut(s) 20, 210, 252, 310
MbiI CCGCTC 1 cut(s) 277
MboI GATC 4 cut(s) 18, 208, 250, 308
MboII GAAGA 3 cut(s) 103, 203, 350
MflI RGATCY 2 cut(s) 208, 308
MluCI AATT 1 cut(s) 52
MlyI GAGTC 1 cut(s) 478
MnlI CCTC 2 cut(s) 250, 349
Mph1103I ATGCAT 1 cut(s) 110
MseI TTAA 2 cut(s) 381, 476
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 4 cut(s) 18, 208, 250, 308
NlaIII CATG 2 cut(s) 163, 411
NlaIV GGNNCC 2 cut(s) 137, 261
NsiI ATGCAT 1 cut(s) 110
PfeI GAWTC 1 cut(s) 416
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 137, 261
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 444
PsuI RGATCY 2 cut(s) 208, 308
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 2 cut(s) 381, 476
Sau3AI GATC 4 cut(s) 18, 208, 250, 308
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 1 cut(s) 140
SetI ASST 3 cut(s) 201, 341, 465
SfaNI GCATC 4 cut(s) 117, 207, 286, 444
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 3 cut(s) 92, 254, 289
SmoI CTYRAG 3 cut(s) 92, 254, 289
Sse9I AATT 1 cut(s) 52
SsiI CCGC 2 cut(s) 76, 277
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 248
TasI AATT 1 cut(s) 52
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 2 cut(s) 381, 476
Tru9I TTAA 2 cut(s) 381, 476
TspDTI ATGAA 3 cut(s) 176, 296, 342
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.