Rh2AG322900

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003486
Physical Location & Seq
Forward (+)
46410700 .. 46412949
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG322900.1

Sequence Viewer

Length: 501 bp
ATGAACACTTCAATGAAGCAATCCGATGAAGAATATGGCCAGAGTTTCCTTCCTACAGTATGCAACCGGAATTTTTTTTTAGTACTTTTGTTGCGGTTTAGAGAAAGTCTCAAGGGTGAAATATGCATCTTCATTCCTTTGATAGTTCTCCGGTCCCTGGATGGCTTGGATTTACCCATGAACCAAAAAATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCTTCAGATGCTTGTTGACATATTTGTGAACTATGACTGTGATCTTGAGGCACCGAACTTGTTTGAGCGGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGTTGTTTCATCCCATACTACTTCAATAAACGGTTCATCTCTTCTGTGTCTTGTGAATGTGCTTAAATCACTCATAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACACTCAGTCTCTGGAAGGAGATGCTTCAACTAAAGAGTTTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

166

Amino Acids

19.11

Weight (kDa)

6.58

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 24 - 96 3.3e-18 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AccBSI CCGCTC 1 cut(s) 295
AciI CCGC 2 cut(s) 94, 295
AclWI GGATC 2 cut(s) 234, 321
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 157, 205
AgsI TTSAA 4 cut(s) 12, 212, 360, 479
AjnI CCWGG 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 113, 464
AlwI GGATC 2 cut(s) 234, 321
AlwNI CAGNNNCTG 1 cut(s) 462
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 153
AxyI CCTNAGG 1 cut(s) 200
BalI TGGCCA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 277
BccI CCATC 2 cut(s) 155, 199
BciT130I CCWGG 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 113, 464
BfmI CTRYAG 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 155, 279
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 4 cut(s) 135, 225, 304, 462
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpuEI CTTGAG 3 cut(s) 95, 292, 293
BsaBI GATNNNNATC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 2 cut(s) 66, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 205
Bse21I CCTNAGG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 302
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 5 cut(s) 166, 210, 303, 319, 344
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 157, 205
BseMII CTCAG 1 cut(s) 469
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 277
BsiSI CCGG 2 cut(s) 67, 151
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 157, 205
BsmAI GTCTC 2 cut(s) 113, 464
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 226, 268, 326
BspACI CCGC 2 cut(s) 94, 295
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 155, 279
BspPI GGATC 2 cut(s) 234, 321
BspT107I GGYRCC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 226, 268, 326
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 3 cut(s) 58, 266, 368
Bst6I CTCTTC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 200, 455
BstF5I GGATG 5 cut(s) 166, 210, 303, 319, 344
BstKTI GATC 3 cut(s) 229, 271, 329
BstMAI GTCTC 2 cut(s) 113, 464
BstMBI GATC 3 cut(s) 226, 268, 326
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 226, 326
BstYI RGATCY 2 cut(s) 226, 326
Bsu36I CCTNAGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 5 cut(s) 166, 210, 303, 319, 344
CaiI CAGNNNCTG 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 178, 426
CviJI RGCY 2 cut(s) 39, 165
CviKI_1 RGCY 2 cut(s) 39, 165
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 200, 455
DpnI GATC 3 cut(s) 228, 270, 328
DpnII GATC 3 cut(s) 226, 268, 326
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 128
FaeI CATG 2 cut(s) 181, 429
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 177, 425
FokI GGATG 5 cut(s) 173, 217, 310, 326, 331
HaeIII GGCC 1 cut(s) 39
HapII CCGG 2 cut(s) 67, 151
Hin1II CATG 2 cut(s) 181, 429
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 434
HpaII CCGG 2 cut(s) 67, 151
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 244, 256
Hpy188I TCNGA 3 cut(s) 25, 234, 439
Hpy188III TCNNGA 2 cut(s) 272, 463
Hpy8I GTNNAC 2 cut(s) 244, 256
HpyAV CCTTC 2 cut(s) 59, 460
HpyCH4III ACNGT 3 cut(s) 58, 266, 368
HpyCH4V TGCA 5 cut(s) 63, 126, 222, 317, 324
HpyF3I CTNAG 2 cut(s) 200, 455
Hsp92II CATG 2 cut(s) 181, 429
Kzo9I GATC 3 cut(s) 226, 268, 326
LpnPI CCDG 6 cut(s) 53, 80, 143, 164, 170, 448
LweI GCATC 4 cut(s) 135, 225, 304, 462
MalI GATC 3 cut(s) 228, 270, 328
MbiI CCGCTC 1 cut(s) 295
MboI GATC 3 cut(s) 226, 268, 326
MboII GAAGA 4 cut(s) 41, 121, 221, 368
MflI RGATCY 2 cut(s) 226, 326
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 1 cut(s) 70
MluNI TGGCCA 1 cut(s) 39
MnlI CCTC 1 cut(s) 268
Mox20I TGGCCA 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 128
MscI TGGCCA 1 cut(s) 39
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 2 cut(s) 11, 251
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 2 cut(s) 67, 151
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
NdeII GATC 3 cut(s) 226, 268, 326
NlaIII CATG 2 cut(s) 181, 429
NlaIV GGNNCC 2 cut(s) 155, 279
NsiI ATGCAT 1 cut(s) 128
PfeI GAWTC 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 155, 279
PspPI GGNCC 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 462
PsuI RGATCY 2 cut(s) 226, 326
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 2 cut(s) 11, 251
SaqAI TTAA 1 cut(s) 399
Sau3AI GATC 3 cut(s) 226, 268, 326
Sau96I GGNCC 1 cut(s) 153
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 158
SetI ASST 1 cut(s) 219
SfaNI GCATC 4 cut(s) 135, 225, 304, 462
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 11, 251
SmlI CTYRAG 3 cut(s) 110, 272, 307
SmoI CTYRAG 3 cut(s) 110, 272, 307
Sse9I AATT 1 cut(s) 70
SsiI CCGC 2 cut(s) 94, 295
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 3 cut(s) 58, 266, 368
TasI AATT 1 cut(s) 70
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TspDTI ATGAA 8 cut(s) 17, 29, 42, 121, 194, 314, 333, 360
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 70
ZrmI AGTACT 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.