Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003486

Physical Location & Seq

Genomic Coordinates Forward (+)

68623820 .. 68624926

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG507600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCTTATGAGGCTATTATGGCAAAAAGATAACCAGATGGGCATGAAGGAAGATAACAATGAAGTCACTTTGAAGACGAGGATTTTATCTCTTGAGCTTCTGCAGGGTTTGTTGGAAGGAGTTGCTTCAATTTCGCCGTCCCCTATCATATTACAGTATGCAACTAGAATTTTGTTGCGGTTCAGAGAAAGTCTCAAGGTGAGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

69

Amino Acids

7.96

Weight (kDa)

9.39

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003486)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130521 RchiOBHm_Chr2g0138841 RchiOBHm_Chr4g0419091 RchiOBHm_Chr4g0442741 RchiOBHm_Chr6g0280591
rosa_laevigata	RLG00000008535 RLG00000033475
rosa_multiflora	Rmu_sc0010558.1_g000004 Rmu_sc0013296.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145580 Rroxscaffold_3G00269240
rosa_rugosa	Rorug01G0360800 Rorug02G0176000 Rorug04G0057500 Rorug06G0068800
rosa_samantha	Rh2AG322900 Rh2BG351800 Rh4AG395200 Rh4CG201000 Rh4DG402100 Rh6BG000800 Rh6BG000900 Rh6CG324500 Rh6CG416900 Rh6DG240200 Rh6DG310200 Rh6DG467200 Rh7CG021900 Rh7CG319300 Rh7CG507600 Rh7CG507700 Rh7DG255600 Rh7DG475300
rosa_wichuraiana	Rw2G030120 Rw2G032750 Rw3G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	73, 129
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	80
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpuEI	CTTGAG	2 cut(s)	113, 179
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 19
BstSFI	CTRYAG	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	80
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	2 cut(s)	13, 97
CviKI_1	RGCY	2 cut(s)	13, 97
FaeI	CATG	1 cut(s)	46
FaiI	YATR	6 cut(s)	8, 19, 44, 149, 159, 208
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	42
FspBI	CTAG	1 cut(s)	165
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	40, 110
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	103, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 19
Hsp92II	CATG	1 cut(s)	46
LpnPI	CCDG	2 cut(s)	47, 89
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	62, 85
MluCI	AATT	2 cut(s)	129, 168
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	3, 72
MwoI	GCNNNNNNNGC	2 cut(s)	10, 19
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	105
SetI	ASST	2 cut(s)	99, 201
SfcI	CTRYAG	1 cut(s)	101
SgeI	CNNG	6 cut(s)	46, 55, 90, 104, 116, 177
SmlI	CTYRAG	2 cut(s)	92, 194
SmoI	CTYRAG	2 cut(s)	92, 194
Sse9I	AATT	2 cut(s)	129, 168
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	156
TasI	AATT	2 cut(s)	129, 168
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	59, 75
XapI	RAATTY	1 cut(s)	168
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.